Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g0280 ATGAATCATCGACCTTTCCAAGACCACATGATGTTCATCTCTCAGTTATACCCCGCTGATGCACCATACACGCAGATAATTGCTCAACAAGGGGAGAGTAAGAAGCCAAAACGCCGTCGTAGTAAGAAGAACAAAGGAGGAGAAAACGGTGCCTCGGAAGCCAACAAGAAGAGGAAGCTCAGTGCGGAGCAAGTTAACCTACTTGAACAGAACTTTGGAAATGAACATAAACTCGAGTCTGAGAGGAAAGACAAGCTCGCATTGGAGCTTGGTTTGGACCCTCGACAAGTTGCAGTATGGTTTCAAAACAGAAGAGCTCGCTGGAAGAACAAAAAGCTAGAAGAAGAGTACTCAAACCTTAAAAAATCCCATGAAGCCACCTTGCTCGAGAAATGTCGATTGGAGACCGAGGTTCTGAAGCTGAAAGATCAACTTTCTGAGGCGGCGAAGGAGATTCAGAGGCTGCGAGAGAGTGGTGATAGAGTTCCAAGTAACAGCCCTAGCTCGTCACAGTCACAACAATCACAGTATATGGAGACGGTGGACCCACCATTTTATGGGGTGTTTGGAGTTGATGGATATGATGATGATGTATTGTACGGGCCCGAGACTCAGTGCATGAACGCCTTGGAATGGATTAATCTGTATGTGTAA 654 0.4602 MNHRPFQDHMMFISQLYPADAPYTQIIAQQGESKKPKRRRSKKNKGGENGASEANKKRKLSAEQVNLLEQNFGNEHKLESERKDKLALELGLDPRQVAVWFQNRRARWKNKKLEEEYSNLKKSHEATLLEKCRLETEVLKLKDQLSEAAKEIQRLRESGDRVPSNSPSSSQSQQSQYMETVDPPFYGVFGVDGYDDDVLYGPETQCMNALEWINLYV* 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g0280 217 PRINTS Lambda-repressor HTH signature 82 91 IPR000047 GO:0003677
Pvu2g0280 217 PRINTS Lambda-repressor HTH signature 91 107 IPR000047 GO:0003677
Pvu2g0280 217 MobiDBLite consensus disorder prediction 159 177 - -
Pvu2g0280 217 ProSitePatterns 'Homeobox' domain signature. 86 109 IPR017970 GO:0000981|GO:0006355
Pvu2g0280 217 Coils Coil 138 158 - -
Pvu2g0280 217 MobiDBLite consensus disorder prediction 28 61 - -
Pvu2g0280 217 Gene3D - 47 121 - -
Pvu2g0280 217 CDD homeodomain 56 112 IPR001356 GO:0003677
Pvu2g0280 217 SMART HOX_1 54 115 IPR001356 GO:0003677
Pvu2g0280 217 Coils Coil 103 130 - -
Pvu2g0280 217 Coils Coil 51 71 - -
Pvu2g0280 217 ProSiteProfiles 'Homeobox' domain profile. 51 111 IPR001356 GO:0003677
Pvu2g0280 217 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-40-LIKE 7 216 - -
Pvu2g0280 217 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 7 216 IPR045224 GO:0003700
Pvu2g0280 217 MobiDBLite consensus disorder prediction 152 177 - -
Pvu2g0280 217 MobiDBLite consensus disorder prediction 45 61 - -
Pvu2g0280 217 SUPERFAMILY Homeodomain-like 55 120 IPR009057 -
Pvu2g0280 217 Pfam Homeodomain 56 110 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g0280 Pvu-Chr2 2895614 2897838 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g0280 1 217 Homeobox Transcription Factor Family AT4G36740 54.911 9.96e-70 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Pvu2g0280 Homeodomain 1.8e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g0280 K09338 - gmx:100809616 318.161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g0280 2 2895614 2897838 Pvu2g0280 2 2895614 2897838 ECH
Pvu2g0280 2 2895614 2897838 Pvu3g2592 3 47946723 47948547 PCT