Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g0266 ATGACGAGTGGTTTTGGGGAATCAACGAGACCGTCTGCTCCGAGCCCATCATGTTCGGGTAACAGTTCAAACGATGCTGGTGATTTCGAATGCAACATATGCTTCGATTTGGCGCAAGACCCCGTGATCACACTCTGTGGTCACCTATTCTGTTGGCCATGCCTTTATAGGTGGCTCCATCATCATTCCCATTCTCAGGAGTGCCCTGTTTGCAAGGCCCTTGTGCAGGAGGAGAAATTGGTGCCTCTTTATGGCAGGGGCAAAACACAGACTGATCCCAGAACTAAATCATATCCTGGAATGGAGATTCCTCACCGTCCTTCGGGGCAGAGGCCGCAAACTGCGCCGCCCCCACCTCCTCCTGAGGCCAACCCTTTTGGGAGTTATGGGTTTGGACTCATGGGAGGGTTCATTCCCATGGCAACTGCCAGATTTGGGAACTTCACACTTTCCACTGCCTTTGCTGGGTTTATACCGTCACTGCTCAACATTCATTTCCATGGCTTTCAGGATGCCACTGTCTACGGGACAACTTCTGGTTACCCCTTTGGGTTTAATAGCTTTCACGGAGGGGGCACGCGCGGGTATCCGCAGGCAACTGGCGGCCAAGTGCAGCGGCAGGAGGACAATGTTTTGAAGAATCTGCTTATGTTGATTGGATTTCTTGTCCTCCTTACGGTTATTTTTGTGTGGTAA 696 0.5129 MTSGFGESTRPSAPSPSCSGNSSNDAGDFECNICFDLAQDPVITLCGHLFCWPCLYRWLHHHSHSQECPVCKALVQEEKLVPLYGRGKTQTDPRTKSYPGMEIPHRPSGQRPQTAPPPPPPEANPFGSYGFGLMGGFIPMATARFGNFTLSTAFAGFIPSLLNIHFHGFQDATVYGTTSGYPFGFNSFHGGGTRGYPQATGGQVQRQEDNVLKNLLMLIGFLVLLTVIFVW* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g0266 231 SMART ring_2 31 71 IPR001841 -
Pvu2g0266 231 ProSitePatterns Zinc finger RING-type signature. 46 55 IPR017907 -
Pvu2g0266 231 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 18 94 IPR013083 -
Pvu2g0266 231 SUPERFAMILY RING/U-box 27 84 - -
Pvu2g0266 231 MobiDBLite consensus disorder prediction 1 21 - -
Pvu2g0266 231 ProSiteProfiles Zinc finger RING-type profile. 31 72 IPR001841 -
Pvu2g0266 231 PANTHER RING ZINC FINGER PROTEIN-RELATED 2 229 - -
Pvu2g0266 231 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 2 229 IPR045103 GO:0005783|GO:0006511|GO:0061630
Pvu2g0266 231 MobiDBLite consensus disorder prediction 84 123 - -
Pvu2g0266 231 CDD RING-HC_AtRMA_like 29 73 - -
Pvu2g0266 231 Pfam Zinc finger, C3HC4 type (RING finger) 30 71 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g0266 Pvu-Chr2 2795350 2796863 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g0266 21 229 C3H Transcription Factor Family AT2G23780 63.889 4.39e-88 258
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g0266 K10666 - gmx:100814783 444.121
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g0266 2 2795350 2796863 Pvu2g0266 2 2795350 2796863 ECH
Pvu9g0575 9 10297366 10299032 Pvu2g0266 2 2795350 2796863 ECH