Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g0263 ATGATATCTGGTAATATTACTTTTAGTTATTGGCATTTTGCTTTAAACATTATTATTATTGGTATTCTCTTTTCAAATTTTAGTGTTGCAAAACAATCTAAAATACATGAATTGAAAATGAATGTGATCGATCAATGTTGGAGATTGAATCCTAAATGGAGGATTCAGCGTCCTCAACTAGCAACATGTTCTATAGGCTATGCTGGCAAGATGATAAACAACATTGGTGAAGACCTCGTCCATTATAAAGTTATTGACCCTAGTGATGATCCTATAAACCCCAAGCCTGGTACCTTAAGGTATGGAGCTTCTGTAATTCAAGGTAAAGTGTGGATTACATTCCAAAGAGACATGCATATTAAACTCGAGAGACCCCTTCTTATTAGTAGTTTTACCACCATTGATGGTCGAGGAGTTAATGTTGACATTGCTAAAAATGCATGTTTAATGGTCTTTAAGGCCACAAATATAATCATCCATGGCATTCGAATTCATGATTGCAAACCTCAAACCCCAGGGGTTACGATGGGACCAGAAGGAAAGGTGATTTCTCTGGGTCATGTAGATGGAGATGCAATAAGATTAGTTACTGCTTCAAAGATCTGGATTGATCATAATACACTTTACAATTGTCAAGATGGTCTACTTGATGTAACACGAGGTTCGACTGATGTCACTATATCTAATAACTGGTTTAGAAATCAAGACAAGGTTATGCTTCTTGGACATGATGATGGTTATGTGAGAGATCAGAACATGAAGGTTACTGTCGTATATAATCACTTTGGACCTAACTGTAATCAACGCATGCCAAGGATTCGTCATGGATATGCACATGTAGTGAACAATCTTTACTTAGGTTGGCTGCAATATGCCATTGGTGGAAGTATGAGACCTAGCCTCAAAAGTGAAGCTAATCTTTTTATAGCACCAACAAGAGGGAACAAGGAGGTGACATGGAGAAAGAATAATAATACAAATGGAGATGCATGGGAATTTCATTCCGTAAAAGACGCATTTGAGAATGGAGCTTCTTTCACAGTAACAAAAGGAGGACGTGTGCCAAAACCAAACTATAACGAAGAACAACGTTTTAAAGTTGTTGATGTTAAATATGTGAGATCGTTAACCCGCTCATCAGGCATATTACGATGCACTAAAACATCTCTATGTGGATAA 1179 0.3707 MISGNITFSYWHFALNIIIIGILFSNFSVAKQSKIHELKMNVIDQCWRLNPKWRIQRPQLATCSIGYAGKMINNIGEDLVHYKVIDPSDDPINPKPGTLRYGASVIQGKVWITFQRDMHIKLERPLLISSFTTIDGRGVNVDIAKNACLMVFKATNIIIHGIRIHDCKPQTPGVTMGPEGKVISLGHVDGDAIRLVTASKIWIDHNTLYNCQDGLLDVTRGSTDVTISNNWFRNQDKVMLLGHDDGYVRDQNMKVTVVYNHFGPNCNQRMPRIRHGYAHVVNNLYLGWLQYAIGGSMRPSLKSEANLFIAPTRGNKEVTWRKNNNTNGDAWEFHSVKDAFENGASFTVTKGGRVPKPNYNEEQRFKVVDVKYVRSLTRSSGILRCTKTSLCG* 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g0263 392 SMART amb_all 117 314 IPR002022 -
Pvu2g0263 392 Gene3D - 40 384 IPR012334 -
Pvu2g0263 392 PRINTS Pollen allergen Amb family signature 63 80 IPR018082 -
Pvu2g0263 392 PRINTS Pollen allergen Amb family signature 125 141 IPR018082 -
Pvu2g0263 392 PRINTS Pollen allergen Amb family signature 189 210 IPR018082 -
Pvu2g0263 392 PRINTS Pollen allergen Amb family signature 269 288 IPR018082 -
Pvu2g0263 392 PRINTS Pollen allergen Amb family signature 291 310 IPR018082 -
Pvu2g0263 392 PRINTS Pollen allergen Amb family signature 331 355 IPR018082 -
Pvu2g0263 392 PRINTS Pollen allergen Amb family signature 362 385 IPR018082 -
Pvu2g0263 392 PANTHER PECTATE LYASE 18-RELATED 11 388 IPR045032 GO:0030570
Pvu2g0263 392 Pfam Pectate lyase 128 308 IPR002022 -
Pvu2g0263 392 SUPERFAMILY Pectin lyase-like 40 349 IPR011050 -
Pvu2g0263 392 PANTHER PECTATE LYASE 11 388 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g0263 Pvu-Chr2 2768161 2769664 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g0263 71 318 Polysaccharide Lyase AT5G09280 71.774 3.87e-142 404
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g0263 K01728 - gmx:100780437 698.353
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g0263 2 2768161 2769664 Pvu2g0263 2 2768161 2769664 ECH