Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g0254 ATGGGTTGGTTTAGAAAGTTGCTTAAGGGTTCCGATCATATTTCACGTGGACAATACCAAGGCAAATATGGAGAAGACAGAATTTGGGATAACCACCGTAGTTCAATGGATGACTTAACGGATATAGAGAAAGAAGACATTGACCGTGCAATTGCACTCTCTCTGTCAGAGGAGGATCATCTTAAAGGGAAAAAAGTTGTTGAGGATGACTCTCAATCTGAAGATGATGAACTCTGTAAAATTGACGACGAGGAAGACGAATATCTTGCTAAAATTCAACAAGAAGATGAATATCTTGCTAAAATTCAACAACAAGAAGATGAACGTCTTGCTAAAGTTCAACAAGAAGAAGATGAACACATTGCTAAAATTCAACGAGAAGATGAACGTCTTGCTAAAATTCAACAAGATGAAGTTGAACGTCTTGCTAAAGCTCAACTTGAGGAAGACGAGCAACTTGCTAGGGCAATTCAAGAAAGTTTGACCCTTGGTTCTCCTCCTCAATCTGACAATGATTCTTCATTTCTATCTTATCCTCACCTCTTTCCCCCTGGACACAGAATCTGTGCTGGGTGCAAGACTGAGATTGGCCAAGGAAGATTTTTAAGTTGCATGGGAGGTGTCTGGCATCCAGAATGCTTCTGCTGCCATTCATGTCGTCTGCCAATCACTGATTATGAGTTTTCCATGTCTAGCAATCGCCCTTACCATAAATCATGCTATAGGGAGAAGCATCATCCCAGATGTGATGTTTGCAAGAACTTTATCCCAACTAATTCATCTGGCCTCATTGAGTATAGAGCTCATCCTTTCTGGCTACAAAAGTACTGCCCATCTCATGAGCTTGATGGCACTCCTCGTTGCTGTAGCTGCGAAAGAATGGAGCCAAGGGATGCAAAATATCTTTTGCTTGATGATGGTCGAAAGCTATGTTTAGAGTGTCTAGACTCATCAATTATGGATACTCATGAATGCCAACCTCTCTACCTTGAAATACAAGAATTTTATGAAGGTTTAAATATGAAATTGGAGCAGCAAATTCCTATGCTCTTGGTTGAGAGACAAGCTCTGAATGAGGCCATGGAGGGAGAAAAAAATGGTCATCACCACTTACCTGAAACTAGAGGACTCTGCTTGTCAGAAGAGCAAACTGTGACTACTATTTCAAGGAGGCCAAAGATCGGAGCCGGCTACCAAGTCATAGACATGATAACTGAACCTTATAAGCTGATCCGTCGCTGTGAAGTGACAGCCATTCTAGTTTTGTATGGCCTTCCTAGGTTGTTAACAGGATCAATCCTAGCTCACGAGATGATGCATGCATGGCTTAGGTTTAAAGGTTATCCTAACCTCAGTCCGGAAGTTGAAGAAGGAATCTGCCAAGTCTTGGCTCATATGTGGTTAGATTCAGAGCTGTATACCGGATCTGGGAATGGCGGTGCATCATCATCCTCGTCTTCATCTTCATCATCACCTTCCTCCTCTTCTGCATCATCAAAGAAGGGTAAACGTTCCGATTTTGAGAAGAAACTCGGTGAGTTTTTTAAACACCAGATTGAGTCAGATACCTCCTCAGCTTATGGAGATGGATTCAGATCGGGTAACCAAGCAATGCTCAAGTATGGCCTCAAAAGCACCCTTGACCATATCCATATGACAGGAAGTTTTCCATATTGA 1677 0.4198 MGWFRKLLKGSDHISRGQYQGKYGEDRIWDNHRSSMDDLTDIEKEDIDRAIALSLSEEDHLKGKKVVEDDSQSEDDELCKIDDEEDEYLAKIQQEDEYLAKIQQQEDERLAKVQQEEDEHIAKIQREDERLAKIQQDEVERLAKAQLEEDEQLARAIQESLTLGSPPQSDNDSSFLSYPHLFPPGHRICAGCKTEIGQGRFLSCMGGVWHPECFCCHSCRLPITDYEFSMSSNRPYHKSCYREKHHPRCDVCKNFIPTNSSGLIEYRAHPFWLQKYCPSHELDGTPRCCSCERMEPRDAKYLLLDDGRKLCLECLDSSIMDTHECQPLYLEIQEFYEGLNMKLEQQIPMLLVERQALNEAMEGEKNGHHHLPETRGLCLSEEQTVTTISRRPKIGAGYQVIDMITEPYKLIRRCEVTAILVLYGLPRLLTGSILAHEMMHAWLRFKGYPNLSPEVEEGICQVLAHMWLDSELYTGSGNGGASSSSSSSSSSPSSSSASSKKGKRSDFEKKLGEFFKHQIESDTSSAYGDGFRSGNQAMLKYGLKSTLDHIHMTGSFPY* 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g0254 558 Gene3D Cysteine Rich Protein 183 247 - -
Pvu2g0254 558 MobiDBLite consensus disorder prediction 478 504 - -
Pvu2g0254 558 Pfam LIM domain 189 244 IPR001781 -
Pvu2g0254 558 Pfam Protein DA1 338 553 IPR022087 -
Pvu2g0254 558 PANTHER TRANSCRIPTION FACTOR INTERACTOR AND REGULATOR LIM FAMILY-RELATED 1 124 - -
Pvu2g0254 558 PANTHER TRANSCRIPTION FACTOR INTERACTOR AND REGULATOR LIM FAMILY-RELATED 125 558 - -
Pvu2g0254 558 CDD LIM_DA1 189 241 - -
Pvu2g0254 558 MobiDBLite consensus disorder prediction 478 500 - -
Pvu2g0254 558 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 148 161 IPR003903 -
Pvu2g0254 558 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 181 214 - -
Pvu2g0254 558 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 216 272 - -
Pvu2g0254 558 ProSitePatterns LIM zinc-binding domain signature. 189 223 IPR001781 -
Pvu2g0254 558 PANTHER PROTEIN DA1-RELATED 2 125 558 IPR045218 -
Pvu2g0254 558 PANTHER PROTEIN DA1-RELATED 2 1 124 IPR045218 -
Pvu2g0254 558 ProSiteProfiles LIM domain profile. 187 247 IPR001781 -
Pvu2g0254 558 SMART lim_4 188 240 IPR001781 -
Pvu2g0254 558 SMART uim 42 61 IPR003903 -
Pvu2g0254 558 SMART uim 148 167 IPR003903 -
Pvu2g0254 558 Coils Coil 99 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g0254 Pvu-Chr2 2660954 2668059 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Pvu2g0254 DA1-like 2.1e-105 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g0254 - - vra:106777867 1070.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g0254 2 2660954 2668059 Pvu2g0254 2 2660954 2668059 ECH
Pvu3g2582 3 47788365 47794718 Pvu2g0254 2 2660954 2668059 ECH
Pvu2g0254 2 2660954 2668059 Pvu3g2582 3 47788365 47794718 PCT