Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g0253 ATGTCCCAAGATTTTCAACCAGGAATCTTCAGTTTCCCGAATGGGTTGGAGAGAGGAAGGGTGAGTCCACAGCAGCAGATCCGGAGGGACAAAGTAAGGTTACAAGGAGAGTTCGGGGCAGCGCCATTGGTAGGGATAGAGGAAGAGGAACCGGTGTACGAGACTGCCGGGATGTTGTCGGAGATGTTCAATTTTCCGCCTACGGCTGCGGCGGAATTGCTGGAGCAGCAGCCTGTGACGGCCACGTTTAGGGCGGCGAGGCAAGTTGGAGAGTGGTACGGAAACAGACAAGGGGTGAATATGATGATGGGTGGATTGGGGGATTCGAAGAACCAAAACGGTGTGAATAACAACCAGCATCAACCACAGCACCAGATTTCAAGCATTAATGCTGACTCAGCAGCTGCCATGCAGCTTTTTCTGATGAACCCTCAAACGAGGTCGCCTTCCCCTCCTCAAACCCACGCCACTCCTTCTTCAACACTCCACATGTTGCTTCCCAATCCTTCTTCCAATTCCCTCCAAGGCTTCACTGGTTCGGCCGTGGGAGGGTCTTTTGGACAATTCACATGGGTTCCCGAGAGTGCTCATCAACAAGGAGGCGTGATGGAAGGGCAAGGTCTTTCGCTGTCGTTGTCTTCTTCACTGGAAGCAGCGAAAGCCGAGGAATTGAGGATGGGGGATAGTGGTTTTCTATTTTACAATCATCAACAAGGTGGTGGTGGTGTTGGAGCTGGTGGTTCTTCTTCTTCCACAGTTCAATTTCCGTACAAGAACAACAGTCATCAACAAGCATTGCATTTGCAAGGGGTGATAGGACACGACAACAACCAGCAGGGACATGTTGGGTTCGGGTCATCCTCGTTAGGTGTAGTTAATGTTCTGAGAAATACAAAGTATGTGAAGGCTGCACAGGAGTTGCTTGAAGAGTTTTGCAGTGTTGGGAGGGGTCAGTTTAAGAAGAGCAAGTTGAATAGGCAGAATTCAAACCCTAATTCAAATCCCGATGGTGGTGGTTCTTCTCCTTCCTCAAAAGATGCTGCTATTCCTCCGCCTCCTCCTCCTCTGTCAGCTGCTGATAGGATTGAGCATCAGAGAAGGAAGGTCAAACTTCTATCAATGCTGGACGAGATGGATAGGAGATACAACCATTACTGCGAGCAGATGCAAATGGTGGTGAACTCATTTGACCTGATGATGGGTTTTGGTGCGGCAGTTCCATACACAGCACTGGCGCAGAAAGCAATGTCTCGGCATTTTCGGTGTCTGAAGGACGCAATAACAGCGCAGCTGAAGCAAAGTTGTGAGCTACTAGGAGAGAAAGAGGGGGCGGGGGCCTCAGGTTTGACCAAGGGTGAGACCCCAAGGCTTAAGGTGCTAGAGCAAAGCCTAAGACAGCAGAGAGCCTTCCACCAGATGGGGATGATGGAACAAGAAGCTTGGCGACCCCAGAGAGGCTTGCCTGAAAGATCTGTCAACATTTTGAGAGCTTGGCTTTTCGAACATTTTCTCCATCCGTATCCAAGCGATGCAGATAAGCATCTGTTGGCACGACAGACTGGCCTATCGCGAAATCAGGTATCAAACTGGTTCATTAATGCCAGGGTTCGGTTGTGGAAACCCATGGTAGAAGAGATGTACCAACAAGAACTTAAAGAAGCAGAGAATACAGAAGAGAGAGAAAATAACCAAAGCAACAACAGCAATACCAGTGGGAACCAAGCACAAACTCCAAGCACGCCAGGAGCAGCTACAACATCAACAGCAACAACAGCTGCACCACCAACAATTACCACAACAAAGCCAACAGGGAAAAAATCCAATATCAATGCTACCGAAAGCGACTCATCACTTGTTGCAATGAATAGACAAGGCTTCTCGGAAAACCAAGGAAAGCAGTCCACCACCACCTCCACCACTATCATGGCCTCCGTCAGCGCCACCACCTCTGAGATTGCACCACCCGGATCACAGTGCCTCGACTCAGATCTGCCCCCACACAGATTAATGGCCACTGATGACACGTGTCGCTTGGTCACAGCAGATTTTGGGACCACATCTGCAAGTGCTGACATTGGATCCACACTCATTAGATTTGGGACCGCAGTTGGTGACGTGTCACTCACCCTAGGGCTTCGCCATGCCGGGAACATGCCAGAGAAAACTCCTTTCTCTGTTAGAGACTTTGGAGCCATTTAA 2199 0.497 MSQDFQPGIFSFPNGLERGRVSPQQQIRRDKVRLQGEFGAAPLVGIEEEEPVYETAGMLSEMFNFPPTAAAELLEQQPVTATFRAARQVGEWYGNRQGVNMMMGGLGDSKNQNGVNNNQHQPQHQISSINADSAAAMQLFLMNPQTRSPSPPQTHATPSSTLHMLLPNPSSNSLQGFTGSAVGGSFGQFTWVPESAHQQGGVMEGQGLSLSLSSSLEAAKAEELRMGDSGFLFYNHQQGGGGVGAGGSSSSTVQFPYKNNSHQQALHLQGVIGHDNNQQGHVGFGSSSLGVVNVLRNTKYVKAAQELLEEFCSVGRGQFKKSKLNRQNSNPNSNPDGGGSSPSSKDAAIPPPPPPLSAADRIEHQRRKVKLLSMLDEMDRRYNHYCEQMQMVVNSFDLMMGFGAAVPYTALAQKAMSRHFRCLKDAITAQLKQSCELLGEKEGAGASGLTKGETPRLKVLEQSLRQQRAFHQMGMMEQEAWRPQRGLPERSVNILRAWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPMVEEMYQQELKEAENTEERENNQSNNSNTSGNQAQTPSTPGAATTSTATTAAPPTITTTKPTGKKSNINATESDSSLVAMNRQGFSENQGKQSTTTSTTIMASVSATTSEIAPPGSQCLDSDLPPHRLMATDDTCRLVTADFGTTSASADIGSTLIRFGTAVGDVSLTLGLRHAGNMPEKTPFSVRDFGAI* 733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g0253 732 SMART HOX_1 481 545 IPR001356 GO:0003677
Pvu2g0253 732 MobiDBLite consensus disorder prediction 322 341 - -
Pvu2g0253 732 MobiDBLite consensus disorder prediction 551 616 - -
Pvu2g0253 732 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 47 721 - -
Pvu2g0253 732 Pfam Associated with HOX 294 428 IPR006563 -
Pvu2g0253 732 Gene3D - 484 546 - -
Pvu2g0253 732 CDD homeodomain 481 542 IPR001356 GO:0003677
Pvu2g0253 732 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 2 47 721 - -
Pvu2g0253 732 SMART prehox3 289 429 IPR006563 -
Pvu2g0253 732 MobiDBLite consensus disorder prediction 322 362 - -
Pvu2g0253 732 Pfam Homeobox KN domain 498 537 IPR008422 GO:0003677|GO:0006355
Pvu2g0253 732 MobiDBLite consensus disorder prediction 561 616 - -
Pvu2g0253 732 Coils Coil 544 567 - -
Pvu2g0253 732 ProSiteProfiles 'Homeobox' domain profile. 478 541 IPR001356 GO:0003677
Pvu2g0253 732 SUPERFAMILY Homeodomain-like 483 548 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g0253 Pvu-Chr2 2626414 2633952 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g0253 289 730 Homeobox Transcription Factor Family AT2G23760 54.819 2.70e-152 457
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Pvu2g0253 POX 1.3e-49 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g0253 - - gmx:100786231 1057.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g0253 2 2626414 2633952 Pvu2g0253 2 2626414 2633952 ECH
Pvu3g2579 3 47740359 47748160 Pvu2g0253 2 2626414 2633952 ECH
Pvu2g0253 2 2626414 2633952 Pvu3g2579 3 47740359 47748160 PCT