Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g0218 ATGAATCTCTATCCTCTTCTTGTTTACACCTTCTTCCTTCGTTATCACCTCAAATCAGGGTATGGTATGGTAGTTTGTGATTTGTGGGAGCACACTCTCGCTCACAGAAAATCACCCAATCCACCTCCACAGCACCACCGCGCTTTCATGGAGCTCAGCTTGGACTTGAGTTTGGGCTTTGTCCCCAAACCCATTTCCCTCTTTTTCGCCGAAGTTTCTGCTAACAGAGACAAGCGCGACAAGGTTGCCACGCTTGACGGCTTCGTGCAGAGGTTGGAGGACGAATTGAGGAAAGTTGAGGCCTTCAAACGCGAGCTTCCTCTCTGCATGCTCCTCCTAAACGATGCAATAGCCAGATTGAAGGAGGAAAAAGGAAAGTGTTCAATATCGCAAGATCCACCCACGAGTGAAGAGTTTATGCCACCGAAAACCATTTCTGGGGGGAAAGAAAATGAAAGATGTGAGAAGAAGAATTGGATGAGTTCAGCTCAGCTTTGGAGTACTCAGAAAATCAAATCGAGGAATGAAGAAAGCGATAGGTCTGTGCCAGAGAACCCAATTGATGGGAATTCGTGTGCCCCGAGGAAGGAGGGTTCACAAATTCCGAGCTTTAGTTTGATGGGTCATGCGTCTGAACTGAGTCATAGCAATTCCAAGAGTGTATGTGGAGATACCAGTTCCGGCTCTTCTTTGCTCCGTGTTGAGGTACAGAGCCAGCCTCAACCGCCGCAACATATGCAGCAGAATCCTAGGAAACAAAGGCGGTGCTGGTCGCCGGAGCTTCACCGGCGTTTTGTGGATGCTCTTCAACAACTTGGTGGAGCACAAGTGGCCACTCCTAAACAGATTAGAGAACTGATGCAGGTGGAGAGCCTGACAAATGATGAAGTGAAAAGCCATTTGCAAAAGTACAGGCTTCATGTGAGGAGATTCCCAGTTTCATCAGTTGGACAGGCTGATAATGGCTCATGGATGGTCCAAGATCAATGTGGGGATAAATCAAAGGGAAACTTTTCACAGTCTGGTTCTCCTCAAGGTCCTCTCACACCTTTCCTCCTAGGAGGAGGAGGCTCTGCAAAGGGTATCTCAAGCCCTGGACGGAACAGTGTGGATGCAGAAGATGAGCAATCAGATTGCAGGAACTGGAAAGGAGGGCTCCACCAGCACCTTGAAGCTGATAACCAGAGCCTCTAA 1194 0.4849 MNLYPLLVYTFFLRYHLKSGYGMVVCDLWEHTLAHRKSPNPPPQHHRAFMELSLDLSLGFVPKPISLFFAEVSANRDKRDKVATLDGFVQRLEDELRKVEAFKRELPLCMLLLNDAIARLKEEKGKCSISQDPPTSEEFMPPKTISGGKENERCEKKNWMSSAQLWSTQKIKSRNEESDRSVPENPIDGNSCAPRKEGSQIPSFSLMGHASELSHSNSKSVCGDTSSGSSLLRVEVQSQPQPPQHMQQNPRKQRRCWSPELHRRFVDALQQLGGAQVATPKQIRELMQVESLTNDEVKSHLQKYRLHVRRFPVSSVGQADNGSWMVQDQCGDKSKGNFSQSGSPQGPLTPFLLGGGGSAKGISSPGRNSVDAEDEQSDCRNWKGGLHQHLEADNQSL* 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g0218 397 Coils Coil 85 105 - -
Pvu2g0218 397 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 48 388 IPR044787 GO:0003700|GO:0006355
Pvu2g0218 397 MobiDBLite consensus disorder prediction 317 397 - -
Pvu2g0218 397 MobiDBLite consensus disorder prediction 317 347 - -
Pvu2g0218 397 Gene3D - 251 308 - -
Pvu2g0218 397 MobiDBLite consensus disorder prediction 235 254 - -
Pvu2g0218 397 SUPERFAMILY Homeodomain-like 250 310 IPR009057 -
Pvu2g0218 397 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 249 309 IPR017930 -
Pvu2g0218 397 MobiDBLite consensus disorder prediction 125 202 - -
Pvu2g0218 397 Pfam Myb-like DNA-binding domain 254 305 IPR001005 -
Pvu2g0218 397 PANTHER MYB-LIKE DNA-BINDING DOMAIN, SHAQKYF CLASS PROTEIN 48 388 - -
Pvu2g0218 397 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 252 307 IPR006447 GO:0003677
Pvu2g0218 397 MobiDBLite consensus disorder prediction 371 387 - -
Pvu2g0218 397 MobiDBLite consensus disorder prediction 235 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g0218 Pvu-Chr2 2328158 2330351 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g0218 50 302 G2-like Transcription Factor Family AT4G37180 43.015 5.21e-52 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Pvu2g0218 Myb_DNA-binding 2.5e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g0218 - - pvu:PHAVU_002G021400g 797.734
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g0218 2 2328158 2330351 Pvu3g3023 3 51926447 51929176 PCT
Pvu3g2540 3 47244605 47247316 Pvu2g0218 2 2328158 2330351 PCT