Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g0216 ATGTCATCATCATCGAATTCGCCGTGCGCGGCGTGCAAGTGTCTGAGGCGAAAGTGCACGCAGGAGTGCGTGTTCGCGCCGTACTTTCCGCCGGACAACCCTCAGAGGTTCGCTTACGTGCACAAGGTTTTCGGGGCTAGCAACGTCGCCAAGCTTCTCAATGAACTCAGCGCCTCGCAGCGAGACGACGCCGTAAAGTCCCTCGCTTACGAGGCCGAGGCTCGTCTCAGGGACCCCGTCTACGGCTGCGTGGGCCTCATCTCCGTCCTCCAACACAAGCTCCGGCAGATCCAGATGGAACTCAACAATGCAAAGAAGGAACTGGCAACATACATCGGTCCCCAAGCTTTTCAAGGCTTACCGGCCCCCATTCTTCAACAGCAGCCCAACAACCTTTTTTCCGGTTCGCTGTATGGCAACATGGCGGGCGTGACGGCAGCTACTCACGGCGGGCAGCTGGTGATTCGCGAAGCCCAGTCGCCACAGCAGCATCAGATCTTGGAGGCCCAGCAGTTGGCCGCGGCTGTGGCGGCCAGGGAGCAGCAGGAGATGTTCAGGAGTTACGAACATCAACAGCAGCAGGAGTTTCTGCGGTTCAGTGGTGGGTTCGATGTGGGTTCGGCTTCTGCTGGTGGGTTCAGCCAGATATCCCCAGTTGCTGCATCCGCCGATCAGTTGTCTCCTTCGTTGGCTTTGGGATCCTTCGATAACGCTTATCACATGCAGCAACCACAAGTTGCAGAGCCTCATCCTCATCCTCACAACATTCCTTTTGAGGCTCAGCTTCTTCTCCCTCCACAACAGAAGCAAACACAGCAACAAACACAGCAGTCCCAACTTCCCCTTCACCAGCCACAGTCTGAAAGCGAGGAGTGTAGGAGTCTTGGTCCAACCTGTTGA 900 0.5667 MSSSSNSPCAACKCLRRKCTQECVFAPYFPPDNPQRFAYVHKVFGASNVAKLLNELSASQRDDAVKSLAYEAEARLRDPVYGCVGLISVLQHKLRQIQMELNNAKKELATYIGPQAFQGLPAPILQQQPNNLFSGSLYGNMAGVTAATHGGQLVIREAQSPQQHQILEAQQLAAAVAAREQQEMFRSYEHQQQQEFLRFSGGFDVGSASAGGFSQISPVAASADQLSPSLALGSFDNAYHMQQPQVAEPHPHPHNIPFEAQLLLPPQQKQTQQQTQQSQLPLHQPQSESEECRSLGPTC* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g0216 299 PANTHER LOB DOMAIN-CONTAINING PROTEIN 36-LIKE 3 271 - -
Pvu2g0216 299 Coils Coil 87 107 - -
Pvu2g0216 299 MobiDBLite consensus disorder prediction 265 299 - -
Pvu2g0216 299 ProSiteProfiles LOB domain profile. 7 108 IPR004883 -
Pvu2g0216 299 Pfam Lateral organ boundaries (LOB) domain 8 105 IPR004883 -
Pvu2g0216 299 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 3 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g0216 Pvu-Chr2 2305438 2308774 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g0216 3 293 AS2 family AT5G66870 48.607 2.22e-75 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Pvu2g0216 LOB 4.4e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g0216 - - gmx:102664012 455.677
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g0216 2 2305438 2308774 Pvu2g0216 2 2305438 2308774 ECH
Pvu2g0216 2 2305438 2308774 Pvu3g2538 3 47230938 47232422 PCT
Pvu3g2539 3 47240211 47240741 Pvu2g0216 2 2305438 2308774 PCT