Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g0195 ATGTCGCAACGATCTGTGCCGGCACCGTTTTTGACGAAGACGTATGAGTTGGTGGAGGATCCCGGGACGAACGAGGTGATATCGTGGAGTGACAGTGGGAACACGTTTGTGGTGTGGAAGCATGCGGATTTTGCCAAGGATTTGCTTCCTAAATCTTTCAAGCACAATAACTTCTCCAGTTTTGTTCGCCAGCTCAACACCTACGGATTCCGAAAGATTGTGCCAGATAAATGGGAATTCGCAAACGAGCATTTCAAACGAGGGAAGAAGGAGCTTCTCTGCGACATCAAACGCCGCAAGACCGTGCCGCAATTGCCGGCGCTTCCTCCGGAGGCTGGAAAATCCGGCGGCGATGGTAGCTCTCCTTTAAACTCCGGCGGTGGAGACGAGGCTGGGTCCACTTCTACCTCGTCCTCTTCCTCCGGTTCGAAGAACACGGGATTGGTGGAAACAAACACAACAGTTTCTCACGAGTTATCGAGCGAGAATCAGAAACTGAAGAAGGATAACGAAACGCTGAGTTGCGAGCTGGCACGTGCGAGGAAGCAGTGCGATGAGCTCGTGGCTTTTCTGAAGAACCGTCTGATGGTGGGTCCTGATCAGATAGATCGCATCATGCGGCAAGGAAGTTGTGGATCTGAGAAGGCGGTAGGTGAAGAAGGTGGTGAAGAATGTTTGAAACTGTTTGGTGTTTGGTTGAAAGAGGATACGCTAGCAGACAAAAGAAACAACCACCACAAGAGAGTCCGCGAAGAGCAAATGGGCTTCGGTGGGCCTCGTCTCAAGGAATCCAAGCCCGTTGTTGACTTTGAACCTCTAAATCTCATCATGACGAGCAATAAGGTTTGCAACTGA 855 0.5064 MSQRSVPAPFLTKTYELVEDPGTNEVISWSDSGNTFVVWKHADFAKDLLPKSFKHNNFSSFVRQLNTYGFRKIVPDKWEFANEHFKRGKKELLCDIKRRKTVPQLPALPPEAGKSGGDGSSPLNSGGGDEAGSTSTSSSSSGSKNTGLVETNTTVSHELSSENQKLKKDNETLSCELARARKQCDELVAFLKNRLMVGPDQIDRIMRQGSCGSEKAVGEEGGEECLKLFGVWLKEDTLADKRNNHHKRVREEQMGFGGPRLKESKPVVDFEPLNLIMTSNKVCN* 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g0195 284 MobiDBLite consensus disorder prediction 103 149 - -
Pvu2g0195 284 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-1 2 284 - -
Pvu2g0195 284 Pfam HSF-type DNA-binding 10 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pvu2g0195 284 MobiDBLite consensus disorder prediction 118 149 - -
Pvu2g0195 284 SMART hsfneu3 6 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pvu2g0195 284 Coils Coil 156 183 - -
Pvu2g0195 284 Gene3D - 2 101 IPR036388 -
Pvu2g0195 284 SUPERFAMILY "Winged helix" DNA-binding domain 7 99 IPR036390 -
Pvu2g0195 284 PRINTS Heat shock factor (HSF) domain signature 10 33 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pvu2g0195 284 PRINTS Heat shock factor (HSF) domain signature 48 60 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pvu2g0195 284 PRINTS Heat shock factor (HSF) domain signature 61 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pvu2g0195 284 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 2 284 IPR027725 -
Pvu2g0195 284 ProSitePatterns HSF-type DNA-binding domain signature. 49 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g0195 Pvu-Chr2 2097022 2099089 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g0195 2 284 HSF AT4G36990 50.336 2.81e-78 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Pvu2g0195 HSF_DNA-bind 1.4e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g0195 K09419 - gmx:100791543 469.544
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g0195 2 2097022 2099089 Pvu2g0195 2 2097022 2099089 ECH
Pvu2g0195 2 2097022 2099089 Pvu3g2510 3 46868205 46871391 PCT