Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g0189 ATGGAGCAGCGAAAGCTTGTGGTTTTGGGAATTCCGTGGGATGTCGATACTGAAGGATTAAGGGAATACATGAGCAAATTTGGGGAGCTGGAAGATTGCATTGTCATGAAGGAGCGGTCAACTGGACGGTCTCGTGGTTTTGGATATGTTACATTTGCTTCAGTGGATGATGCTAAGGATGTATTATCAGGTGAACATATTCTTGGTAATAGGACGCTGGAAGTCAAAGTGGCCACACCGAAGGAGGAAATGAGGGCACCAGTAAAAAAAGTTACTAGAATATTTGTAGCCAGGATCCCACAATCAGTTACAGAAGCTGCTTTCCGAAGTCATTTTGAGAAGTATGGTGATATAACAGATCTGTACATGCCAAAGGATCAAGGCTCCAAAACACATCGTGGAATTGGTTTCATCACTTTTGCAAGTGCAGATTCTGTGGAGAGTTTGATGTCAGAAACCCATGAACTGGGAGGTTCTGCGGTGGTGGTTGATCGAGCTACACCTAAGGATGAAGACTTTAAGCCTATTGGCAGCAGCAGAATGCCACCACAAGGTGGATATGGTGCATACAATGCTTACATTTCTGCTGCCACTAGATATGCAGCACTTGGTACTCCTACTTTGTATGATCATCCTGGCCCAATTTATGGACGGGGAGAACCTGCTCGGAGAACCAGTAAGAAAATTTTTGTTGGCCGTCTTCCCCCAGAAGCATCTTCTGAGGATCTTCGTCAATATTTTGGAAGATTTGGCCGTATATTGGATGTTTATGTTCCAAGGGATCCTAAGAGAACAGGTCATAGAGGTTTTGGATTTGTTACTTTTGCTGAAGATGGTGTTGCAGATCGTGTCTCACGAAGGTCTCATGAGATTTGTGGGCATCAGGTTGCAATAGATTCGGCCACACCCGTTGATGATGCAGGGCCCAGTGGGAATTTCATGATGGAATCTTTTGGGGGATATGGCGGTCCTGTGCGATCTTATGGGAGGATGTATGGGAGCTTAGACTTTGACGATTGGGGTTATGGAATTGGGAGACCATCTAGAGCAGATTGGAGGTACAGACCGTACTAG 1074 0.4525 MEQRKLVVLGIPWDVDTEGLREYMSKFGELEDCIVMKERSTGRSRGFGYVTFASVDDAKDVLSGEHILGNRTLEVKVATPKEEMRAPVKKVTRIFVARIPQSVTEAAFRSHFEKYGDITDLYMPKDQGSKTHRGIGFITFASADSVESLMSETHELGGSAVVVDRATPKDEDFKPIGSSRMPPQGGYGAYNAYISAATRYAALGTPTLYDHPGPIYGRGEPARRTSKKIFVGRLPPEASSEDLRQYFGRFGRILDVYVPRDPKRTGHRGFGFVTFAEDGVADRVSRRSHEICGHQVAIDSATPVDDAGPSGNFMMESFGGYGGPVRSYGRMYGSLDFDDWGYGIGRPSRADWRYRPY* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g0189 357 SUPERFAMILY RNA-binding domain, RBD 3 85 IPR035979 GO:0003676
Pvu2g0189 357 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 94 152 IPR000504 GO:0003723
Pvu2g0189 357 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 229 283 IPR000504 GO:0003723
Pvu2g0189 357 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 6 73 IPR000504 GO:0003723
Pvu2g0189 357 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 4 80 IPR000504 GO:0003723
Pvu2g0189 357 Gene3D - 1 87 IPR012677 -
Pvu2g0189 357 Gene3D - 88 175 IPR012677 -
Pvu2g0189 357 Gene3D - 222 307 IPR012677 -
Pvu2g0189 357 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 227 303 IPR000504 GO:0003723
Pvu2g0189 357 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 3 357 - -
Pvu2g0189 357 SUPERFAMILY RNA-binding domain, RBD 89 188 IPR035979 GO:0003676
Pvu2g0189 357 SUPERFAMILY RNA-binding domain, RBD 223 326 IPR035979 GO:0003676
Pvu2g0189 357 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 92 168 IPR000504 GO:0003723
Pvu2g0189 357 PANTHER OS01G0945800 PROTEIN 3 357 - -
Pvu2g0189 357 SMART rrm1_1 5 76 IPR000504 GO:0003723
Pvu2g0189 357 SMART rrm1_1 93 164 IPR000504 GO:0003723
Pvu2g0189 357 SMART rrm1_1 228 299 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g0189 Pvu-Chr2 2027776 2032155 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g0189 17 275 Eukaryotic Initiation Factors Gene Family AT2G36660 24.335 4.99e-14 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g0189 K14411 - gmx:100795240 694.115
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g0189 2 2027776 2032155 Pvu2g0189 2 2027776 2032155 ECH