Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g0178 ATGGGCGACATGTACCACTTTGACAAGAATCTCTCTTCGCAGGACGAAATCTCACTTTTTCTGCGTCAGATTCTCCTCCGTTCATCTCCTTCTTCTTCTTCTTCACCCCACTCCATGCCCGGATCCTGCAACTCCAACGTAGCTCACCAAAACGTCAATTCACACACTTCTTTCTCGCCCTCGCAGCTCCAACACGGCAAGATCTCGACCCTTGCTTCCACCGCCTCTTTTCTCTCGGCTTCTGCCGCTTGCGGTTCCTTCAAGGGCCAGACTGCTTCTGCTGCAAATGTGTCTTCTTCTTCTGTTTTAGTGAGCGAGAACGAGAATGATGACTATGATTGTGAAAGTGAGGAGGGTGTCGAAGCTTTCGCCGAAGAAGTTCCGACAAAACCTGCTCCTTCGAGGAGTTCATCTAAGAGATCAAGAGCTGCAGAAGTTCATAATTTGTCTGAGAAGCGAAGAAGGAGTAGGATCAACGAGAAAATGAAGGCCTTGCAAAATCTAATTCCGAATTCAAACAAGACGGATAAGGCTTCAATGCTCGATGAAGCTATTGAATACCTTAAACAGCTTCAGCTCCAAGTACAG 588 0.4728 MGDMYHFDKNLSSQDEISLFLRQILLRSSPSSSSSPHSMPGSCNSNVAHQNVNSHTSFSPSQLQHGKISTLASTASFLSASAACGSFKGQTASAANVSSSSVLVSENENDDYDCESEEGVEAFAEEVPTKPAPSRSSSKRSRAAEVHNLSEKRRRSRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQ 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g0178 196 MobiDBLite consensus disorder prediction 140 157 - -
Pvu2g0178 196 MobiDBLite consensus disorder prediction 30 62 - -
Pvu2g0178 196 Pfam Helix-loop-helix DNA-binding domain 146 192 IPR011598 GO:0046983
Pvu2g0178 196 Gene3D - 137 196 IPR036638 GO:0046983
Pvu2g0178 196 PANTHER TRANSCRIPTION FACTOR SPATULA 11 196 - -
Pvu2g0178 196 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 142 191 IPR011598 GO:0046983
Pvu2g0178 196 MobiDBLite consensus disorder prediction 123 157 - -
Pvu2g0178 196 CDD bHLH_AtPIF_like 143 196 - -
Pvu2g0178 196 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 139 196 IPR036638 GO:0046983
Pvu2g0178 196 SMART finulus 148 196 IPR011598 GO:0046983
Pvu2g0178 196 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 11 196 IPR031066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g0178 Pvu-Chr2 1937728 1939118 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g0178 5 196 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G36930 46.977 5.22e-40 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pvu2g0178 HLH 1.5e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g0178 - - pvu:PHAVU_002G0176001 320.087
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g0178 2 1937728 1939118 Pvu2g0178 2 1937728 1939118 ECH