Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g0171 ATGTGGGATCTGAATGACTCTCCCGATCAGAGGAAGGACTACGAATCTGAAGGTTGCTCTTCTTCGCTGAATGATGATAAAGGCGATAAAGGCAAGAGAGTGGGATCTGTTTCAAATTCAAGCTCCTCTGCTGTGGTCCTCGAAGATGGATCGGAAGAAGAAGACAGTGACAGGGGTGGAAGCAGAACATTGGAGAAAAAAAGCAGTAAAATATTCGGCTTTTCAGTTACACACGGTGACAGTGACCACCCACCTGTCACCCGGCAGTTTTTTCCGGTGGAGGATTCCGACCTTCCTGATTCTGAAGCCGCCGCCGCCGGCGGAAGCTCTTCCTTCCCTCGTGCTCACTGGGTAGGCGTCAAATTTTGTCAATCGGAAGCTCTTGGCGCCGGCAAATCAGTGAAAGTCTCGGAGCCCATGAAGAAAAGTCGGCGAGGACCACGGTCGCGAAGCTCACAGTATCGCGGAGTTACCTTTTACAGGAGAACCGGTCGATGGGAGTCTCATATATGGGATTGTGGAAAGCAAGTGTATTTGGGTGGATTTGACACAGCACATGCAGCTGCTCGTGCGTATGATAGAGCGGCCATTAAGTTCCGGGGGGTGGACGCAGATATCAACTTCAACATAGAAGACTATGAGGAAGACTTGAAGCAGATGAGCAATTTAACCAAGGAAGAGTTTGTGCACGTACTTCGCCGACAAAGCACTGGATTTCCGAGAGGAAGCTCCAAATATAGAGGTGTAACTTTGCACAAGTGTGGAAGATGGGAGGCTCGAATGGGCCAATTTTTGGGCAAAAAGTACGTTTATCTGGGTCTTTTTGACACCGAGATTGAAGCTGCAAGGGCATATGACAAGGCGGCGATAAAATGCAACGGCAAAGAGGCCGTCACCAATTTTGATCCCAGCATCTATGATAATGAACTTAATTCTGAATCCTCAGGTGTAGCTGCAGATCACAATCTGGATTTGAGTTTGGGCAATTCGAGCTCTAAACATGGCAATGGTCAAATATCGGGGAATCACTTCCCAAATTCTGGGACCGATCAGCCCATACCACCTGAATCCAATTGGCGGAATGGAGGATCTAAGCCTAAGGCTCATCTGGTAAATATACTACCAAAACCATGTGGTAGAAGCAACATGGAAGGCTATGCAAGAGATGGGTTTGGGGAGAGTGAAACCTTGAGACTACTGAGCCAAACTCACCTTCAATCTCCAACGGCTAAAGAAATGCATAGATATGGTCCGTATAGGTCGCCTGCTGAGACTCAAATGCCTCATAATTTTGCACATCTTCACCTACCGAATTTTCATGTTCCTAGCAGCAGCAACGGAGGCCGTATTGGAAGCGATCTTTCGTTATCAATGTCTGATCAACAGCAATGGCAAGCCGGGCCTCCACATTTGTTAGCAACTGCTGCAGCATCATCAGGATTCCCACCTCAGATTAGACCCTCCCTAGGTTGGCAGCAGAAAAATGGGTTCCACTCCCTCATGAGACCTTCATGA 1515 0.4805 MWDLNDSPDQRKDYESEGCSSSLNDDKGDKGKRVGSVSNSSSSAVVLEDGSEEEDSDRGGSRTLEKKSSKIFGFSVTHGDSDHPPVTRQFFPVEDSDLPDSEAAAAGGSSSFPRAHWVGVKFCQSEALGAGKSVKVSEPMKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNIEDYEEDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKEAVTNFDPSIYDNELNSESSGVAADHNLDLSLGNSSSKHGNGQISGNHFPNSGTDQPIPPESNWRNGGSKPKAHLVNILPKPCGRSNMEGYARDGFGESETLRLLSQTHLQSPTAKEMHRYGPYRSPAETQMPHNFAHLHLPNFHVPSSSNGGRIGSDLSLSMSDQQQWQAGPPHLLATAAASSGFPPQIRPSLGWQQKNGFHSLMRPS* 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g0171 504 ProSiteProfiles AP2/ERF domain profile. 153 209 IPR001471 GO:0003700|GO:0006355
Pvu2g0171 504 MobiDBLite consensus disorder prediction 322 358 - -
Pvu2g0171 504 Gene3D AP2/ERF domain 152 211 IPR036955 GO:0003700|GO:0006355
Pvu2g0171 504 Gene3D AP2/ERF domain 244 303 IPR036955 GO:0003700|GO:0006355
Pvu2g0171 504 SMART rav1_2 245 308 IPR001471 GO:0003700|GO:0006355
Pvu2g0171 504 SMART rav1_2 153 215 IPR001471 GO:0003700|GO:0006355
Pvu2g0171 504 ProSiteProfiles AP2/ERF domain profile. 245 302 IPR001471 GO:0003700|GO:0006355
Pvu2g0171 504 MobiDBLite consensus disorder prediction 1 33 - -
Pvu2g0171 504 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 502 - -
Pvu2g0171 504 PANTHER AP2 DOMAIN TRANSCRIPTION FACTOR 1 502 - -
Pvu2g0171 504 MobiDBLite consensus disorder prediction 1 109 - -
Pvu2g0171 504 CDD AP2 244 304 IPR001471 GO:0003700|GO:0006355
Pvu2g0171 504 Pfam AP2 domain 153 201 IPR001471 GO:0003700|GO:0006355
Pvu2g0171 504 Pfam AP2 domain 244 293 IPR001471 GO:0003700|GO:0006355
Pvu2g0171 504 PRINTS Ethylene responsive element binding protein signature 246 257 IPR001471 GO:0003700|GO:0006355
Pvu2g0171 504 PRINTS Ethylene responsive element binding protein signature 284 304 IPR001471 GO:0003700|GO:0006355
Pvu2g0171 504 MobiDBLite consensus disorder prediction 134 153 - -
Pvu2g0171 504 SUPERFAMILY DNA-binding domain 152 210 IPR016177 GO:0003677
Pvu2g0171 504 SUPERFAMILY DNA-binding domain 244 304 IPR016177 GO:0003677
Pvu2g0171 504 MobiDBLite consensus disorder prediction 322 376 - -
Pvu2g0171 504 CDD AP2 153 210 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g0171 Pvu-Chr2 1860815 1864323 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g0171 1 334 AP2-EREBP Transcription Factor Family AT4G36920 69.714 3.83e-137 401
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Pvu2g0171 AP2 3.5e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g0171 K09284 - gmx:100786333 852.818
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g0171 2 1860815 1864323 Pvu2g0171 2 1860815 1864323 ECH
Pvu2g0171 2 1860815 1864323 Pvu3g2489 3 46544077 46547812 PCT