Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g0129 ATGTCCAAGGCGCGCGTCTACACCGATGTCAATGTTCTTCGTCCCAAAGAGTATTGGGATTACGAGTCCCTCACCCTTCAGTGGGGTGATCAAGATGATTATGAAGTTGTGCGAAAAGTGGGCAGAGGGAAATATAGTGAAGTTTTTGAAGGCATAAATGTGAATAGCAATGAGCGCTGCATAATCAAGATTCTGAAACCCGTCAAGAAAAAAAAGATTAAAAGAGAGATAAAAATACTTCAGAATATTTGTGGAGGGCCAAATATTGTCAAGCTTCTTGATATTGTCAGAGATCAGCATTCCAAAACTCCTAGTTTGATATTTGAGTATGTCAACAGCACAGATTTTAAAGTTCTGTATCCAACCTTGACTGATTATGACATACGCTATTACATATATGAGCTCCTTAAGGCCCTGGATTACTGTCATTCTCAAGGCATTATGCACAGGGATGTCAAGCCTCATAATGTTATGATTGATCACGAGTTACGAAAACTGCGCTTGATTGACTGGGGTCTTGCTGAATTTTATCATCCTGGAAAGGAATATAACGTTCGTGTGGCTTCAAGGTACTTTAAGGGTCCTGAACTTCTAGTTGATTTGCAAGACTATGACTACTCGTTAGACATGTGGAGCCTTGGCTGCATGTTTGCTGGAATGATATTTCGCAAAGAACCTTTCTTTTATGGCCATGACAACCATGATCAGCTTGTAAAAATAGCTAAGGTGCTTGGGACTGATGAACTGAATGCTTATCTTAATAAGTATCATCTGGAACTTGATCCTCAACTTGATGCGCTTGTTGTAAGACACAGTCGAAAACCCTGGTCTAAATTTATCAATGCAGATAATCAGCATCTTGTGTCTCCTGAGGCAATTGATTTTCTTGATAAGCTTCTTCGATATGATCACCAGGACAGGCTAACAGCTAGAGAAGCAATGGCACATCCATATTTCTCTCAAGTAAGGGCAGCAGAAAGTAGCAGAATGAGGACACAGTAA 1002 0.4022 MSKARVYTDVNVLRPKEYWDYESLTLQWGDQDDYEVVRKVGRGKYSEVFEGINVNSNERCIIKILKPVKKKKIKREIKILQNICGGPNIVKLLDIVRDQHSKTPSLIFEYVNSTDFKVLYPTLTDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSLDMWSLGCMFAGMIFRKEPFFYGHDNHDQLVKIAKVLGTDELNAYLNKYHLELDPQLDALVVRHSRKPWSKFINADNQHLVSPEAIDFLDKLLRYDHQDRLTAREAMAHPYFSQVRAAESSRMRTQ* 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g0129 333 ProSitePatterns Serine/Threonine protein kinases active-site signature. 147 159 IPR008271 GO:0004672|GO:0006468
Pvu2g0129 333 ProSiteProfiles Protein kinase domain profile. 34 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu2g0129 333 SMART serkin_6 34 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu2g0129 333 SUPERFAMILY Protein kinase-like (PK-like) 9 323 IPR011009 -
Pvu2g0129 333 CDD STKc_CK2_alpha 15 319 IPR045216 GO:0004674|GO:0006468
Pvu2g0129 333 PANTHER CASEIN KINASE II SUBUNIT ALPHA 1 333 IPR045216 GO:0004674|GO:0006468
Pvu2g0129 333 Pfam Protein kinase domain 34 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu2g0129 333 ProSitePatterns Protein kinases ATP-binding region signature. 40 63 IPR017441 GO:0005524
Pvu2g0129 333 PANTHER CASEIN KINASE II SUBUNIT ALPHA-3 1 333 - -
Pvu2g0129 333 Gene3D Transferase(Phosphotransferase) domain 1 111 320 - -
Pvu2g0129 333 Gene3D Phosphorylase Kinase; domain 1 25 83 - -
Pvu2g0129 333 Gene3D Phosphorylase Kinase; domain 1 87 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g0129 Pvu-Chr2 1464941 1470439 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g0129 32 319 Core Cell Cycle Gene Families AT1G76540 29.126 6.28e-43 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CK2 Pvu2g0129 Pkinase 1.2e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g0129 K03097 - gmx:100810748 664.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g0129 2 1464941 1470439 Pvu2g0129 2 1464941 1470439 ECH
Pvu2g0129 2 1464941 1470439 Pvu3g2439 3 45961686 45968724 PCT