Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g0124 ATGAGTTGCAACGGGTGCCGCGTCCTTCGAAAGGGTTGCAGCGACTCTTGTATCCTGCGGCCGTGTCTACAGTGGATCGATACTCCCGAGGCCCAAGGTCACGCCACTGTTTTTGTTGCCAAATTCTTCGGTCGTGCCGACCTCATGTCCTTCATTTCCAACGTCCCTGAGGCCCAAAGGCCCGCTCTGTTTCAGTCTCTTTTGTTTGAGGCTTGTGGACGAACGGTGAATCCCGTCAACGGCGCTGTCGGCCTTTTATGGACTGGAAACTGGCACGTGTGCCAGGCGGCGGTTGAAACGGTCCTCCGTGGCGGTACCGTCAGGCCTGTGCCGGAGCTTCTTGGCCTCGGCGCTCCCACTCCTGACGACGCTTCCGAAGGCGAAGTTACCTGTAACGACAAATGGAGGGTCCGAGATCCGAACCCGATTTTCCGGTTGCCGGGTTCGATGTCCGATAAGGCTGCTTCTGGTGGTAAGCGCAAGCGATTGGAAGAGCTTGCTAAGCTGCAGACGGCCACCACTGATCTCAATCTCCGGTTGACACCGAGTTTCCTGCAGGCGAACTTCGGTTGCCGACAGGAAATTCGATGGCCGAGATCGCCGTCGATAAACTCGGAGGAGTCCGGGACCACGACGGCGGCGTGCTTGGAAAGCGCGATCGGAGATCACTACGCTCCCGACGGAGACCGGAAAGTGCTGAACCTCTTCATTTGA 714 0.5784 MSCNGCRVLRKGCSDSCILRPCLQWIDTPEAQGHATVFVAKFFGRADLMSFISNVPEAQRPALFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQAAVETVLRGGTVRPVPELLGLGAPTPDDASEGEVTCNDKWRVRDPNPIFRLPGSMSDKAASGGKRKRLEELAKLQTATTDLNLRLTPSFLQANFGCRQEIRWPRSPSINSEESGTTTAACLESAIGDHYAPDGDRKVLNLFI* 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g0124 237 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
Pvu2g0124 237 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 237 - -
Pvu2g0124 237 Pfam Lateral organ boundaries (LOB) domain 2 101 IPR004883 -
Pvu2g0124 237 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g0124 Pvu-Chr2 1403702 1405256 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g0124 1 236 AS2 family AT3G49940 53.876 3.74e-80 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Pvu2g0124 LOB 4.1e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g0124 - - gmx:100802764 449.129
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g0124 2 1403702 1405256 Pvu3g2430 3 45862977 45864555 ECH
Pvu2g0124 2 1403702 1405256 Pvu2g0124 2 1403702 1405256 ECH
Pvu2g0124 2 1403702 1405256 Pvu7g0451 7 3508488 3510206 PCT
Pvu3g2430 3 45862977 45864555 Pvu2g0124 2 1403702 1405256 PCT