Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g0119 ATGATCGATATGATTCAAAATAACAATCAACTAATTCCAAAACCACCATCCATGTCTTCTTCTGGACCAATCAATTCTTCTTGTGACATGAGATCCAATAATTCAAAATCAAGAAGACAAAACAACAATACATCTTCATCAACAAAAGATTTATGGGAACGTCTTTTTTATCAAGGTTATAAAGCAGATGTTTGCATCAATACTAATAATGGTGGCATTGTTTATGCTCATTCTAACATTCTCGCCATGGCTTCTCCTGTATTGAAAGGCATACTAAAGCAAGCAAATAGATGTGGTCGATGGCGAACAATCTCAATCACTGGGGTTCCACATGATGTAGTTATAACTTTTATTCAATATTTATACACTTATAGTTATGAGAAAGAAGATATGGAGGAATTTGTACTACATTTGTTGGTGTTGTCACATGTATACATGGTTCCTCACTTAAAGTTTGAATGTGGACAAAATCTAGAATTGGGTTTACTCAGCATAGATAACTTGGTTGATGTATTGCAACTAGCCTTGTTGTGTGATGCTCCAAGACTTAGTCTCATTTGTCAGCGCAAGATAATAGAAAACTTCAAAGTCGTTTCAGAGTCAGAAGGATGGAAAACAATGAAGTTAAGTCATCCACTTCTAGAAAAGGAGATTTTAGAGTTAATGATTGTTGAAGAAAATATAAAAAAGGAAAGGATCAGAAAAATGAAGGAAAGAAAGATATATCTACAATTATATGAGGCAATGGAAGCTCTTGTTCATATATGTAAAGATGGTTGTCGAACTATTGGTCCTTATGATAAAGATCTTCAAGCAAACCAACCATGTAAGTATTCAGCATGTAACGGATTGGAGTTGCTTGTTCGTCATTTTGCTGGATGTAAGTTGAGAGTCCCTGGAGGTTGTGTTCATTGTAAGAGGATGTGGCAATTATTTGAGTTACACTCTCGATTATGTGTTAATTCAGACGATTGTAGAGTTCCTTTATGCAGGAACTTTAAACAACGAATATCAAAACAAAGCAAGAAAGATGAAATTAGATGGAAAATACTGGTTGAAAAGATCTTGAGAACAAAAGGAATTGGGATAGCGTCATGTTTTATGCAACAATAA 1113 0.3432 MIDMIQNNNQLIPKPPSMSSSGPINSSCDMRSNNSKSRRQNNNTSSSTKDLWERLFYQGYKADVCINTNNGGIVYAHSNILAMASPVLKGILKQANRCGRWRTISITGVPHDVVITFIQYLYTYSYEKEDMEEFVLHLLVLSHVYMVPHLKFECGQNLELGLLSIDNLVDVLQLALLCDAPRLSLICQRKIIENFKVVSESEGWKTMKLSHPLLEKEILELMIVEENIKKERIRKMKERKIYLQLYEAMEALVHICKDGCRTIGPYDKDLQANQPCKYSACNGLELLVRHFAGCKLRVPGGCVHCKRMWQLFELHSRLCVNSDDCRVPLCRNFKQRISKQSKKDEIRWKILVEKILRTKGIGIASCFMQQ* 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g0119 370 SUPERFAMILY POZ domain 40 190 IPR011333 -
Pvu2g0119 370 CDD BACK 164 220 - -
Pvu2g0119 370 SMART BTB_4 62 162 IPR000210 GO:0005515
Pvu2g0119 370 Pfam TAZ zinc finger 246 330 IPR000197 -
Pvu2g0119 370 Pfam BTB/POZ domain 57 158 IPR000210 GO:0005515
Pvu2g0119 370 Gene3D TAZ domain 238 358 IPR035898 -
Pvu2g0119 370 MobiDBLite consensus disorder prediction 1 46 - -
Pvu2g0119 370 PANTHER BTB/POZ AND TAZ DOMAIN-CONTAINING PROTEIN 4 6 369 - -
Pvu2g0119 370 PANTHER BTB/POZ AND TAZ DOMAIN-CONTAINING PROTEIN 3-RELATED 6 369 IPR044513 -
Pvu2g0119 370 Gene3D - 163 237 - -
Pvu2g0119 370 ProSiteProfiles BTB domain profile. 62 130 IPR000210 GO:0005515
Pvu2g0119 370 SUPERFAMILY TAZ domain 239 339 IPR035898 -
Pvu2g0119 370 Gene3D Potassium Channel Kv1.1; Chain A 29 162 IPR011333 -
Pvu2g0119 370 ProSiteProfiles Zinc finger TAZ-type profile. 236 333 IPR000197 -
Pvu2g0119 370 SMART TAZ_2 239 331 IPR000197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g0119 Pvu-Chr2 1296142 1299438 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TAZ Pvu2g0119 BTB 3.1e-10 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g0119 - - var:108334777 604.749
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g0119 2 1296142 1299438 Pvu2g0119 2 1296142 1299438 ECH