Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g0105 ATGGGTGCTCCTAAGCAAAAGTGGACTGCAGAGGAAGAAGCGGCATTGAAAGCTGGAGTTGTCAAACATGGGGCTGGAAAATGGCGCACCATACTTACCGACCCCGAGTTCAGTTCCATTCTGCGCATGCGTTCTAATGTTGATCTCAAGGACAAATGGAGGAACATAAATGTGACGGCAATATGGGGATCAAGGCAGAAGGCAAAGCTTGCTCTTAAAAAGAACCTACTACCATCCCCCAAAATTGACAATAATCACATGGCCTTGAGTACTGTAGTTCAACGCGACAGAGGAGCTGCAGATTCCAAGCCTTTGGCAGTTTCTGGTGGAATATCTCCTAATTCAAAGGAAAAAGTATCAAGGCCACAGAACAACTTCCAGTTGGATACTCTTATATTAGAGTCTATTATCAAGTTGAAGGAGCCAAAGGGTTCTGACAGGGCAGCAATTGCTTCATATATAGAGGATCAATACTGTTCTACGCCTACCCTCAGAAAGTTACTGTCAACAAAACTGAAGCACATGGTAGCAAGTGGAAAATTAATGAAGGTAAAGCATAAGTACAGGATTGCAACAAATTTAACTATGTCTGAGAAAAGAAGATGTTCTTCCTTGTTACTACTGGAAGGGAGGCCCAAAGATTCTCCAAAAACTGAGAAGACTGGTGTCAACATTCTTTCAAAATCCGAAATTGATGCAGAGCTATCAAAAATGAAGGGTGTGACACCACAAGAGGCAGCAGCAGCTGCTGCAAAAGCAGTTGCTGAAGCGGAAGCTGCCATTGCCGAGGCTGAGGCAGCAGCTAGGGAGGCAGATGCTGCAGAAGCCGAGGCAGAAGCTGCACGAGTGTTTGCAAAAGCAGCAATAAAGGCACTAAAATGCAAGACGCTTCACATTTGA 900 0.4467 MGAPKQKWTAEEEAALKAGVVKHGAGKWRTILTDPEFSSILRMRSNVDLKDKWRNINVTAIWGSRQKAKLALKKNLLPSPKIDNNHMALSTVVQRDRGAADSKPLAVSGGISPNSKEKVSRPQNNFQLDTLILESIIKLKEPKGSDRAAIASYIEDQYCSTPTLRKLLSTKLKHMVASGKLMKVKHKYRIATNLTMSEKRRCSSLLLLEGRPKDSPKTEKTGVNILSKSEIDAELSKMKGVTPQEAAAAAAKAVAEAEAAIAEAEAAAREADAAEAEAEAARVFAKAAIKALKCKTLHI* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g0105 299 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 124 192 IPR005818 GO:0000786|GO:0003677|GO:0006334
Pvu2g0105 299 SUPERFAMILY Homeodomain-like 2 67 IPR009057 -
Pvu2g0105 299 CDD SANT_TRF 6 57 - -
Pvu2g0105 299 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Pvu2g0105 299 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Pvu2g0105 299 Pfam linker histone H1 and H5 family 129 186 IPR005818 GO:0000786|GO:0003677|GO:0006334
Pvu2g0105 299 PANTHER MYB TRANSCRIPTION FACTOR 1 299 - -
Pvu2g0105 299 SUPERFAMILY "Winged helix" DNA-binding domain 122 201 IPR036390 -
Pvu2g0105 299 SMART h15plus2 122 187 IPR005818 GO:0000786|GO:0003677|GO:0006334
Pvu2g0105 299 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Pvu2g0105 299 Gene3D - 2 59 - -
Pvu2g0105 299 Gene3D - 120 201 IPR036388 -
Pvu2g0105 299 PANTHER SINGLE MYB HISTONE 4 1 299 IPR044597 GO:0003691
Pvu2g0105 299 SMART sant 4 59 IPR001005 -
Pvu2g0105 299 Coils Coil 247 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g0105 Pvu-Chr2 1188411 1193883 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g0105 1 295 Single Myb Histone (SMH) Gene Family AT5G67580 54.054 2.31e-75 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Pvu2g0105 Linker_histone 9.9e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g0105 K09422 - gmx:778165 459.529
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g0105 2 1188411 1193883 Pvu3g2414 3 45681112 45689638 PCT