Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g0093 ATGAAGCCTGTTGAAAATGGCGATACCGTTAACATAAACTATCAAAATAGCTGGTTAGGCTTCTCCCTCTCCCCACAAATGATGAGTATAATTGTTCCTTCACAGTCTCATCAAACACAGCCTTCATCTGCTGCTGCTGAAACAACTCCACCAACATACTACCACCACACACCTCTTCATAACTATGGACTCCAAGGTGAACATGTTGGAATGTGTTCTTCCTTGCCTATCATGCCCCTTAAATCCAATGTCTCGTTCTATGGAATAGAAGCTATGAGCAGATCACAAGCACAAGCAATGACAACTACTTCCGCAATACCTCTGAGCTTGGATAGTATGCTTTACAACCAGCTCTCTTGTCATGGATCGAACGATCCAAGTAACCAAAACCATGTACAAGAGAACATCAGCCAGCAACAACTATCATACTATTCTTCCTTAAGAAACCATGATGTGATTTTAGAAGGGTCTAAGCACCAACTCCCTTGTATAGCTGAGGATGAAGCTGCTTGTCTTAAAAGTTGGTTCTCAAGGGAGGACTTTCCTGCTTGTCAAGTGCAGGAGTCAAGGATGTTTGTTCCTTTGGAGGATAATGGAAGCAAATCTGGATCCATTGGATCAATAACATATGGGGATTTACATTCATTGAATTTGTCTGTGAGCCCTAGGAGACGATCAAGCTGTGTCACAGGCTCGCCTGCCATCACTGACACGAAGAAAAGGGGGCTTGAAATGGTGGACCAGAATCAGAAGCAAATAGTTCATAGGAAATCCATAGACACCTTTGGGCAAAGAACATCTCAATATAGAGGTGTAACAAGGCATAGGTGGACTGGTAGATATGAAGCTCATCTATGGGACAACAGCTGCAAGAAAGAGGGCCAAGGAAGGAAAGGAAGGCAGGTTTATCTGGGGGGCTATGATATGGAAGAAAAGGCTGCAAGAGCTTACGACATGGCCGCACTCAAGTATTGGGGACCCTCTTCTCATATAAATTTCCCATTGGAAAATTATCAAAACGAACTTGAGGAAATGAAAAACTTAACGAGACAAGAATATGTTGCTCATTTACGAAGGAAAAGCAGCGGATTCTCTAGAGGAGCATCCATGTATAGAGGAGTAACAAGGCACCACCAACATGGAAGGTGGCAAGCTCGAATTGGGAGAGTGGCAGGAAACAAAGATCTATATCTTGGAACCTTCAGCACCCAAGAAGAAGCAGCAGAAGCCTATGATATTGCTGCCATTAAATTCAGAGGAGTTAATGCTGTTACTAACTTTGATATAATAAGATATGACGTGGAAAAAATTATGGCAAGCGACAACCTTCTTAGCAGTGAACAAGCTAAGCGGAACAGACAGAAAGAGGATGGCACAAGAAACGAGGCCTTTGTAAACCAAAATCCTTGTACATATCAACACGCTAAGGAAACCGTTCTAATGCAGAAAAGCTGCAAGATGGTTCCTGATCCATCATCCCAACAGCTTGACCAAAATCCACCAAGAATTGAGAGTTGTAGAACGGTTATATTTCATCAAGAAGTAGAGGAATCGAGTAACATGGGAACACACTTGTCAAATCCTTCTTCTCTGGTGACAAGTTTGAGTAGCTCAAGAGAAGAGAGCCCAGATAAGACAAGCTTGCCAATGCTCTTTGGAATGCCTTCAACAATGTCTAAATCATTCACTAGCATTCCAACAAGTGACGAAGATTCTTGGGAGCTATCGTCCAATTTGAGGCCAGCTCTTTCTTTGCCTCAGATGCCAAATTTTGCTTCCTGGACCGACGCATAA 1794 0.4281 MKPVENGDTVNINYQNSWLGFSLSPQMMSIIVPSQSHQTQPSSAAAETTPPTYYHHTPLHNYGLQGEHVGMCSSLPIMPLKSNVSFYGIEAMSRSQAQAMTTTSAIPLSLDSMLYNQLSCHGSNDPSNQNHVQENISQQQLSYYSSLRNHDVILEGSKHQLPCIAEDEAACLKSWFSREDFPACQVQESRMFVPLEDNGSKSGSIGSITYGDLHSLNLSVSPRRRSSCVTGSPAITDTKKRGLEMVDQNQKQIVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQGRKGRQVYLGGYDMEEKAARAYDMAALKYWGPSSHINFPLENYQNELEEMKNLTRQEYVAHLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGVNAVTNFDIIRYDVEKIMASDNLLSSEQAKRNRQKEDGTRNEAFVNQNPCTYQHAKETVLMQKSCKMVPDPSSQQLDQNPPRIESCRTVIFHQEVEESSNMGTHLSNPSSLVTSLSSSREESPDKTSLPMLFGMPSTMSKSFTSIPTSDEDSWELSSNLRPALSLPQMPNFASWTDA* 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g0093 597 ProSiteProfiles AP2/ERF domain profile. 268 334 IPR001471 GO:0003700|GO:0006355
Pvu2g0093 597 ProSiteProfiles AP2/ERF domain profile. 370 428 IPR001471 GO:0003700|GO:0006355
Pvu2g0093 597 Coils Coil 335 355 - -
Pvu2g0093 597 MobiDBLite consensus disorder prediction 518 544 - -
Pvu2g0093 597 CDD AP2 267 334 IPR001471 GO:0003700|GO:0006355
Pvu2g0093 597 Gene3D AP2/ERF domain 370 430 IPR036955 GO:0003700|GO:0006355
Pvu2g0093 597 Gene3D AP2/ERF domain 267 336 IPR036955 GO:0003700|GO:0006355
Pvu2g0093 597 SUPERFAMILY DNA-binding domain 369 428 IPR016177 GO:0003677
Pvu2g0093 597 MobiDBLite consensus disorder prediction 446 465 - -
Pvu2g0093 597 SMART rav1_2 268 340 IPR001471 GO:0003700|GO:0006355
Pvu2g0093 597 SMART rav1_2 370 434 IPR001471 GO:0003700|GO:0006355
Pvu2g0093 597 MobiDBLite consensus disorder prediction 552 597 - -
Pvu2g0093 597 MobiDBLite consensus disorder prediction 518 597 - -
Pvu2g0093 597 Pfam AP2 domain 371 420 IPR001471 GO:0003700|GO:0006355
Pvu2g0093 597 Pfam AP2 domain 268 326 IPR001471 GO:0003700|GO:0006355
Pvu2g0093 597 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 14 553 - -
Pvu2g0093 597 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT 14 553 - -
Pvu2g0093 597 PRINTS Ethylene responsive element binding protein signature 269 280 IPR001471 GO:0003700|GO:0006355
Pvu2g0093 597 PRINTS Ethylene responsive element binding protein signature 410 430 IPR001471 GO:0003700|GO:0006355
Pvu2g0093 597 CDD AP2 369 429 IPR001471 GO:0003700|GO:0006355
Pvu2g0093 597 SUPERFAMILY DNA-binding domain 267 336 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g0093 Pvu-Chr2 1058028 1061555 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g0093 1 597 AP2-EREBP Transcription Factor Family AT4G37750 42.145 1.98e-141 420
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Pvu2g0093 AP2 5.1e-13 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g0093 2 1058028 1061555 Pvu3g2393 3 45498765 45502904 PCT