Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g0087 ATGGGTTTTGATCACGATGCCAATACCTCTGGCCTTCACCTCGTTCTAGGGTTATCTTTGACTGCTACCACCACTCCATCCACCAAGCCTCGTGATCATCATCATCATCATCTTTGTGTTATTAAGCCTACGCCAACCAAGCCCTATTCCCCCAATGAACCATCTTTAACGTTGGGTTTGTCTGGCGAGAGCTGCCACCTGGCCAAGCAAGTGCCCAGAAATAACAACGTGGCCAACAACAACAGTAAAGTTTATTGTGAGGATCCTCTTGACATGTCCAGACAGACATCACCTCACAGCGTGGTTTCGTCTTTCTCAACTGGGAGGGTTGTCAAGAGGGAGAGAGATCTTAGCTTTGAAGAGGTAGAGGCAGAGGCCGAGGCAGAAGAGAGGGTTTCTTCAAGACTGAGCGACGAAGAAGAAGACGGCTCCAATGCTAAGAAGAAACTCAGACTCACCAAAGAACAATCTGCACTACTAGAGGAGAGCTTCAAACAACACAGCACTCTCAATCCTAAACAGAAGCAAGCTTTAGCCAGACAGTTAAATCTACGGCCTCGACAAGTTGAAGTGTGGTTCCAGAATCGGAGAGCCAGAACAAAGCTGAAGCAGACAGAGGTGGACTGTGAGTTCTTAAAGAAATGCTGTGAAACGTTGACGGACGAAAACAGAAGGTTAAAGAAGGAGCTGCAGGAGCTGAAGGCACTGAAACTAACTCAACCCTTGTACATGCCTATGCCTGCGGCAACACTCACCATGTGCCCTTCGTGCGAGAGGCTCGGTGGTGTGAGCGATAACGCTTCCAATAAAAGCCCCTTCTCTATGGCTCCCAAGCCTCACTTCTACAATCCCTTTGCCAATCCTTCTGCAGCATGTTGA 879 0.4846 MGFDHDANTSGLHLVLGLSLTATTTPSTKPRDHHHHHLCVIKPTPTKPYSPNEPSLTLGLSGESCHLAKQVPRNNNVANNNSKVYCEDPLDMSRQTSPHSVVSSFSTGRVVKRERDLSFEEVEAEAEAEERVSSRLSDEEEDGSNAKKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLKKELQELKALKLTQPLYMPMPAATLTMCPSCERLGGVSDNASNKSPFSMAPKPHFYNPFANPSAAC* 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g0087 292 SMART halz 203 246 IPR003106 GO:0006355|GO:0043565
Pvu2g0087 292 PANTHER - 11 292 - -
Pvu2g0087 292 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT9 11 292 - -
Pvu2g0087 292 SUPERFAMILY Homeodomain-like 144 211 IPR009057 -
Pvu2g0087 292 MobiDBLite consensus disorder prediction 118 150 - -
Pvu2g0087 292 Pfam Homeodomain 147 201 IPR001356 GO:0003677
Pvu2g0087 292 Gene3D - 151 201 - -
Pvu2g0087 292 Coils Coil 119 139 - -
Pvu2g0087 292 MobiDBLite consensus disorder prediction 128 150 - -
Pvu2g0087 292 Pfam Homeobox associated leucine zipper 203 237 IPR003106 GO:0006355|GO:0043565
Pvu2g0087 292 Coils Coil 209 239 - -
Pvu2g0087 292 ProSiteProfiles 'Homeobox' domain profile. 143 203 IPR001356 GO:0003677
Pvu2g0087 292 SMART HOX_1 145 207 IPR001356 GO:0003677
Pvu2g0087 292 CDD homeodomain 147 204 IPR001356 GO:0003677
Pvu2g0087 292 ProSitePatterns 'Homeobox' domain signature. 178 201 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g0087 Pvu-Chr2 967574 969308 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g0087 1 292 Homeobox Transcription Factor Family AT4G37790 58.224 7.98e-96 282
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pvu2g0087 Homeodomain 1.8e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g0087 K09338 - gmx:100784129 465.307
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g0087 2 967574 969308 Pvu3g2387 3 45376192 45377790 PCT