Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g0076 ATGATGGAAATCGCGTCCACCAACTACTTCCCTGAACTTGAAATGGAGTATCTTAGCTTTCTTGATCAATACCAGATGGATTCTATTGCATGCCCACTGGATGACTTCGACTTCGAGTCTTTCTCCGGATCCCCAGAGAGCAATTCATCTTATCAGCTCAACTCCGAAAGCACACCAAATTGTTTCCCAGCTGAAAGTCCTGATCTGTCTGTTACCCCTCCAAGACCAACCAAGAGGATCAAGACATTCAATACCTTCAAAACGTGTGCCAGTCACTTAATTTCCCAGAATGTTTCCGCTTCTCCATCCTCTCAAATTATTTCTTTTGGCCACGTTAATGCTTCACCACGTGGTTCCCACCAATTTCACAACCTCCATGGGAGGCCTAAAATCGAAAACCCGTCTAGTGAGAACATGGACTTTACAGACTTCGTTTCTCAAGGTTCATATGAGGGCAAAAGTTTCCTCAGTTCTGATAATAGAACGAACCTGGTTGGCATAACCACTAGGAACCCAATCCAAGCCCAAGAGCACGTAATAGCTGAAAGAAAACGAAGGGAAAAGCTCAGCCAGAAGTTCATCGCTCTTTCTGCCGTCCTCCCTGGCCTCAAGAAGATGGACAAGGCTTCAGTGTTGGGAGATGCTATCAAGTATGTGAAACAACTGCAAGAGCGCGTGCAAACTCTGGAGGAGAAAACAGCGAAGAGCACAACCGGTTCTTCAGTCCTGTTGAAAAGATCTATTCTCTTTGCTGACGATGAAAATTCTGACAGCCACTGCGACCATTCACTCCCTGAAATCGAAGTCAGAGTTACCGGGAAAGACGTACTCATAAGAACTCAAAGCGATAAACACAGTGGGCGCGCGGCAAAGATACTCAGCGAATTAGAAAAGCTTCATTTCATTGTCCAGAGTAGCAGCCTTTTGCCCTTCGGCAATAACAATATTGATGTAACTATTATTGCTCAGATGAAGGAAAATTACATGGCAGCAAAGGATCTTCTAGGAAGGTTACGACAGGCTTTGAAGCAAGTTGATGGGGCCTAA 1047 0.4499 MMEIASTNYFPELEMEYLSFLDQYQMDSIACPLDDFDFESFSGSPESNSSYQLNSESTPNCFPAESPDLSVTPPRPTKRIKTFNTFKTCASHLISQNVSASPSSQIISFGHVNASPRGSHQFHNLHGRPKIENPSSENMDFTDFVSQGSYEGKSFLSSDNRTNLVGITTRNPIQAQEHVIAERKRREKLSQKFIALSAVLPGLKKMDKASVLGDAIKYVKQLQERVQTLEEKTAKSTTGSSVLLKRSILFADDENSDSHCDHSLPEIEVRVTGKDVLIRTQSDKHSGRAAKILSELEKLHFIVQSSSLLPFGNNNIDVTIIAQMKENYMAAKDLLGRLRQALKQVDGA* 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g0076 348 Coils Coil 212 232 - -
Pvu2g0076 348 Gene3D - 168 237 IPR036638 GO:0046983
Pvu2g0076 348 Pfam Helix-loop-helix DNA-binding domain 176 223 IPR011598 GO:0046983
Pvu2g0076 348 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 177 236 IPR036638 GO:0046983
Pvu2g0076 348 Coils Coil 321 341 - -
Pvu2g0076 348 PANTHER BASIC HELIX LOOP HELIX (BHLH) DNA-BINDING FAMILY PROTEIN 1 344 - -
Pvu2g0076 348 MobiDBLite consensus disorder prediction 43 76 - -
Pvu2g0076 348 CDD bHLH_AtNAI1_like 175 247 - -
Pvu2g0076 348 SMART finulus 179 228 IPR011598 GO:0046983
Pvu2g0076 348 MobiDBLite consensus disorder prediction 43 65 - -
Pvu2g0076 348 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 173 222 IPR011598 GO:0046983
Pvu2g0076 348 PANTHER BHLH TRANSCRIPTION FACTOR 1 344 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g0076 Pvu-Chr2 860605 862788 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g0076 2 342 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 36.798 3.02e-58 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pvu2g0076 HLH 1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g0076 - - var:108334767 583.178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g0076 2 860605 862788 Pvu2g0076 2 860605 862788 ECH
Pvu2g0076 2 860605 862788 Pvu3g2379 3 45237056 45239851 PCT