Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g0075 ATGGATGCATCAGAACCTAACTGGTTTTCGGATTTCGAAACGGAGGATTGCAACTTGTTCCGACAATGTCAGCTGGAGATTGAAGACGATGAAGAGTTACTTTCCCTTGAGATAGCAAGTGCCCTGGAAAACTTTCCGCCGCCGCAGCATCAGCAACCTTTCTCTTCGGAGAGTCACACATCGTATTCGGAAACCAGTAATTTGGTCAGGCCCGCCAAGCAGCTCAAAACGAATTTGTCCAGTTGGAACTCATCCCCCATCACCGACAAACACTTTTCACCCAATATTTCCTCGTCTACCTCTTCTTCTCCAACCTCCCAGATTATGCTTCCGGTTGAGAACACTCAACTTCATGGGATTGTTTCTGCTGTCCTGAGTCCGCAACAGAACAAAGGTGTTTCAGTTTCACCCCCAGAGACCCGAAAAAGATCATCAGAAAACCCGAACTACGAAACTAAAAGCCCCAAAAGCCAAGGGAGCTTCAAGACTTCCGGTCATGGTGGGGATCACATCATCGCGGAGAGGAAACGGAGAGAGAAACTGAGCCAGAGCTTAATTGCTCTAGCTGCTCTTATTCCAGGCTTAAAGAAGATGGACAAGGCTTCAGTGCTGGGAGACGCTATCAGGTACGTGAAAGAGCTCCAAGAGCGTCAGAAAACTCTTGAGGAGAACAAGAACAGAGACGACGTGGGGTCTGTGGTGATGGTGAACAAGGCACGGCTGAGCTACCGCGACGGGTGTGGTAGGGCAAGCCTCCCTCGCGTGGAAGCACGAGTGTCAGAGAAGGATGTGCTCCTTCGCATCCACTGCCAAAAACAAAAAGGTCTTCTGCTCAAAATACTTGTGGAGATTCAAAACCTTCATCTCTTCGTTGTAAATAGCAGTGTCCTATCTTTTGGGGACTCCATTATCGACATCACCATTGTTGCTCAGATGGGGACGGATTACAAGTTGACGATAAATGAGCTTGTAAAGAACCTACGCAGGGCCACTTTGAAATCCATGTCATAA 1011 0.4817 MDASEPNWFSDFETEDCNLFRQCQLEIEDDEELLSLEIASALENFPPPQHQQPFSSESHTSYSETSNLVRPAKQLKTNLSSWNSSPITDKHFSPNISSSTSSSPTSQIMLPVENTQLHGIVSAVLSPQQNKGVSVSPPETRKRSSENPNYETKSPKSQGSFKTSGHGGDHIIAERKRREKLSQSLIALAALIPGLKKMDKASVLGDAIRYVKELQERQKTLEENKNRDDVGSVVMVNKARLSYRDGCGRASLPRVEARVSEKDVLLRIHCQKQKGLLLKILVEIQNLHLFVVNSSVLSFGDSIIDITIVAQMGTDYKLTINELVKNLRRATLKSMS* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g0075 336 MobiDBLite consensus disorder prediction 80 106 - -
Pvu2g0075 336 SMART finulus 171 220 IPR011598 GO:0046983
Pvu2g0075 336 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 170 226 IPR036638 GO:0046983
Pvu2g0075 336 Gene3D - 165 228 IPR036638 GO:0046983
Pvu2g0075 336 MobiDBLite consensus disorder prediction 124 143 - -
Pvu2g0075 336 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 165 214 IPR011598 GO:0046983
Pvu2g0075 336 MobiDBLite consensus disorder prediction 45 67 - -
Pvu2g0075 336 Coils Coil 204 224 - -
Pvu2g0075 336 PANTHER TRANSCRIPTION FACTOR NAI1 6 333 - -
Pvu2g0075 336 Pfam Helix-loop-helix DNA-binding domain 170 215 IPR011598 GO:0046983
Pvu2g0075 336 MobiDBLite consensus disorder prediction 44 67 - -
Pvu2g0075 336 MobiDBLite consensus disorder prediction 150 164 - -
Pvu2g0075 336 MobiDBLite consensus disorder prediction 124 169 - -
Pvu2g0075 336 PANTHER BHLH TRANSCRIPTION FACTOR 6 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g0075 Pvu-Chr2 849358 852602 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g0075 8 330 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 36.994 1.24e-55 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pvu2g0075 HLH 3.8e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g0075 - - vun:114174269 434.106
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g0075 2 849358 852602 Pvu3g2378 3 45216543 45218543 PCT