Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g0072 ATGGCTGCAGAGATTGGCCTAGTCTCCATGACCCAGATCCAAAAATTATCACAATCCCAACACCTCAAAAACCAACAAACTCAACCAAACCCTAACACCACCACCACCACCACCCCTTCCTCTTGGATGTGGAATCCTAGGGAACAACTGCAGCAGCAAGAAGATGATGATGATTCGTGGGAGGTCAGAGCTTTTGCAGAAGACACAAGGAACATCATGGGAACCACATGGCCTCCACGGTCCTACACCTGCACCTACTGCAGAAGGGAGTTCCGCTCCGCCCAAGCTCTCGGCGGCCACATGAACGTCCACCGCCGCGACCGTGCACGCCTCCACCAACCCCCTCCTTCCTCCTCCTCCACCACCACCACCTCTTCTCTTCCCACTTCTTCACCCTACATCAACATCCCTCCTCAAGACCTTGTTGCAAATGCAGGGTTATGCCTCCTCTACCACTTGCCATCAAGCCCTAGTGCACCACCCTTCCCTAATTCCCCCACTTCTAATGGCCCTTCTTCTTCCCCCTCTCCATCCACTTTTCTCTCTATCTCCTCCTATCCTTCAAACAATTTCCTGATGCAAACTTCCTTTAATTTTCCCAGTGCACCATCAGCTGGGATCAACCCTGCTACTGTTTCCTCTTTCTGCTATAATAACTCTAGCAAAGTGGAACAATCGGCAACTTCTTCCTCTTTCGCTACCGGCCACCTGGAAGAGCTTGATCTAGAGCTCCGCCTCGGGCACAAGCCAACACAAACCTCATAA 765 0.5176 MAAEIGLVSMTQIQKLSQSQHLKNQQTQPNPNTTTTTTPSSWMWNPREQLQQQEDDDDSWEVRAFAEDTRNIMGTTWPPRSYTCTYCRREFRSAQALGGHMNVHRRDRARLHQPPPSSSSTTTTSSLPTSSPYINIPPQDLVANAGLCLLYHLPSSPSAPPFPNSPTSNGPSSSPSPSTFLSISSYPSNNFLMQTSFNFPSAPSAGINPATVSSFCYNNSSKVEQSATSSSFATGHLEELDLELRLGHKPTQTS* 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g0072 254 MobiDBLite consensus disorder prediction 159 179 - -
Pvu2g0072 254 MobiDBLite consensus disorder prediction 18 44 - -
Pvu2g0072 254 MobiDBLite consensus disorder prediction 113 133 - -
Pvu2g0072 254 Pfam C2H2-type zinc finger 82 106 - -
Pvu2g0072 254 MobiDBLite consensus disorder prediction 109 133 - -
Pvu2g0072 254 Gene3D Classic Zinc Finger 73 129 - -
Pvu2g0072 254 SUPERFAMILY beta-beta-alpha zinc fingers 79 109 IPR036236 -
Pvu2g0072 254 PANTHER OS07G0101800 PROTEIN 43 248 - -
Pvu2g0072 254 ProSiteProfiles Zinc finger C2H2 type domain profile. 82 109 IPR013087 -
Pvu2g0072 254 PANTHER ZINC FINGER C2H2-TYPE/INTEGRASE DNA-BINDING DOMAIN-CONTAINING PROTEIN-RELATED 43 248 - -
Pvu2g0072 254 SMART c2h2final6 82 104 IPR013087 -
Pvu2g0072 254 ProSitePatterns Zinc finger C2H2 type domain signature. 84 104 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g0072 Pvu-Chr2 805396 806931 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g0072 40 250 C2H2 Transcription Factor Family AT4G17810 39.819 1.86e-40 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pvu2g0072 zf-C2H2_6 3e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g0072 - - gmx:100818142 335.109
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g0072 2 805396 806931 Pvu2g0072 2 805396 806931 ECH
Pvu2g0072 2 805396 806931 Pvu3g2374 3 45149792 45152206 PCT