Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g0068 ATGGATTCTCGGGAACCGCACCAGCAACCGCAATTGCCAAACATGATGGTGGGACCCACCTCCTACCCTTCCATGTTGGCCCCTGCCACCGCCCGATTCCCTTTCATCAACACCAACCACCACCACCACAACCACAACCCTCCTCCTCCGCCTCCACCACCTCCTCCCGAGCCTCTCAACGACATCAACAACAACAACACGTGCGAGGCTGCGCTGAAGCCGTGCGCGCTTGGAGTGGGTTCCTCGGAGTCCTCGAAGAAGAAGAGGGGCCGGCCCAGAAAGTACTCGCCAGATGGCAACATTGCGTTGGGCCTTGTCCCCAACCACGCCGCCGCTTCTTCTGCCGAACCTCCAGCCAAGAAGCACCGCGGACGCCCCCCTGGTTCCGGCAAGAAACAGATGGACGCCCTTGGAATCTCTGGAACTGGTTTCACGCCCCATGTTATATCAGCCGAAGCTGGCGAGGACATTGCTGCAAAAATTATGGCCTTCTGTGAGCAAGGACCACGAACAGTTTGCATTCTTTCTGCGATTGGTCCTATCCGCAATGTCACCATTCGACAGCCGCCCTCTGCCTCCACCCTGTCTGGCCCTGATGTGTCATATGAGGGTGAATTTGAGATCATATCACTTTCAGGTTTTACTCAACAATCTGAAAATAATAGTGGTCATAACGGAATACGTTCCTTGAATGTGAGTTTGGCAGGTCCTGATGGACGAGTATTGGGTGGTGAAGTTGCTGGGGCTCTTACTGCAGCGTCGGCAGTGCAGGTAGTTGTGGGTAGCTTTATTGCAGATGGAAAAAAGTCTAGCTCAAGTAACCTGAAATCTGGACGTTCTACGACGCCATCATCTCAATTGTTAACTTTTGGTGCTCCTACGACTCCAACGACTCCTACTTCTCAAGGGCCTTCAACAGAGTCATCTGAGGATAACGAGAATAGTAATTTTATTAAAGGCCCGGGAGTCCCGGGACTCTTTAATAATGCCAGTCAGCCTATTCATAACCTGCCGATGTACCATCATCAACTGTGGACTGGCCATACTCAGCAGTGA 1056 0.5256 MDSREPHQQPQLPNMMVGPTSYPSMLAPATARFPFINTNHHHHNHNPPPPPPPPPPEPLNDINNNNTCEAALKPCALGVGSSESSKKKRGRPRKYSPDGNIALGLVPNHAAASSAEPPAKKHRGRPPGSGKKQMDALGISGTGFTPHVISAEAGEDIAAKIMAFCEQGPRTVCILSAIGPIRNVTIRQPPSASTLSGPDVSYEGEFEIISLSGFTQQSENNSGHNGIRSLNVSLAGPDGRVLGGEVAGALTAASAVQVVVGSFIADGKKSSSSNLKSGRSTTPSSQLLTFGAPTTPTTPTSQGPSTESSEDNENSNFIKGPGVPGLFNNASQPIHNLPMYHHQLWTGHTQQ* 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g0068 351 MobiDBLite consensus disorder prediction 44 60 - -
Pvu2g0068 351 SUPERFAMILY AF0104/ALDC/Ptd012-like 143 264 - -
Pvu2g0068 351 MobiDBLite consensus disorder prediction 268 330 - -
Pvu2g0068 351 MobiDBLite consensus disorder prediction 1 134 - -
Pvu2g0068 351 ProSiteProfiles PPC domain profile profile. 141 285 IPR005175 -
Pvu2g0068 351 MobiDBLite consensus disorder prediction 1 18 - -
Pvu2g0068 351 Pfam Plants and Prokaryotes Conserved (PCC) domain 146 263 IPR005175 -
Pvu2g0068 351 CDD DUF296 145 263 IPR005175 -
Pvu2g0068 351 SMART AT_hook_2 86 98 IPR017956 GO:0003677
Pvu2g0068 351 SMART AT_hook_2 120 132 IPR017956 GO:0003677
Pvu2g0068 351 MobiDBLite consensus disorder prediction 268 316 - -
Pvu2g0068 351 Gene3D - 146 276 - -
Pvu2g0068 351 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 8 45 316 - -
Pvu2g0068 351 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 45 316 IPR039605 GO:0003680
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g0068 Pvu-Chr2 739721 744559 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g0068 83 351 AT-hook Motif Nuclear Localized (AHL) Family AT4G17950 43.312 6.71e-66 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g0068 - - gmx:100788026 430.254
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g0068 2 739721 744559 Pvu3g2372 3 45082712 45087909 PCT