Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g0066 ATGCCCGTTCCGCTTGCCCCCTACCCTCCACCACCTCCATATACGCCTCCACCAAATGGTGCGCAGAGTCAAGTTGTATGTTCTGGGTGTAGAAACCTTCTGCTTTATCCAGTTGGAGCCACCTCAGTGTGCTGTGCTGTTTGCAATGCAGTCACAACTGTGCCACCTCCTGAAATGGCCCAGTTAGTATGTGGAGGCTGCCACACTCTCCTCATGTTCATCCGTGGAGCCACAAATGTCCAATGCTCTTGTTGTCACACAGTCAATCTAGCTTTGGAAGCAAATCAGGTGGCACATGTCAACTGTGGGAACTGTGAGATGCTACTCAGGTACCAATATGGAGCAAGATCCGTGAAATGTGCCATTTGCAGTTTTGTAACATCAGTTGGGACCTCAACAATCACCACCTCAGAGCAGAAATTCAGCACCTAA 432 0.4954 MPVPLAPYPPPPPYTPPPNGAQSQVVCSGCRNLLLYPVGATSVCCAVCNAVTTVPPPEMAQLVCGGCHTLLMFIRGATNVQCSCCHTVNLALEANQVAHVNCGNCEMLLRYQYGARSVKCAICSFVTSVGTSTITTSEQKFST* 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g0066 143 Pfam LSD1 zinc finger 27 51 IPR005735 -
Pvu2g0066 143 Pfam LSD1 zinc finger 64 88 IPR005735 -
Pvu2g0066 143 Pfam LSD1 zinc finger 102 126 IPR005735 -
Pvu2g0066 143 PANTHER PROTEIN LOL1 1 139 - -
Pvu2g0066 143 PANTHER PROTEIN LSD1 1 139 IPR040319 -
Pvu2g0066 143 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 24 54 IPR005735 -
Pvu2g0066 143 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 99 128 IPR005735 -
Pvu2g0066 143 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 61 90 IPR005735 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g0066 Pvu-Chr2 720443 722914 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Pvu2g0066 zf-LSD1 8.7e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g0066 - - vun:114174628 240.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g0066 2 720443 722914 Pvu3g2368 3 45052549 45054893 PCT