Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g0065 ATGAATTACAGGGATAATGTTCTCTCCGATACCCCTCTATGGGTTTTGTGCAACGAGGTTCAAATGAAAGACATTTCGTTGAAATGCATGGAAATTATATACAACGATACTGTGTCAAAGCTTGTTGCTTTGGGGCACAATGAGGATATTGCCGTGAAAGCGATTCTGCACAATGTTCATTGTTATGGCGCCAACGATTTGGCAACAGACCTGCTGCACAATACCTTGGCTTGTTTGACAAAGGGGAGCTTGGACATGTATGAGTCCAAGCCTGCGTTCTCTGATTTGAAGAAGCTACAGGAGTACACTCTGATGAATCTTGTGTTTTTGTTGCAAGAAGTGAGGCTCGAGTTAGGTGAGGGTGATGCTATGTGGTGTCTCCTCATGAGCGATTACAATGTGTTAAAGGCAATTACCGTCCATATTCCTGTTGTAAGCATGTGTCCTCCTCCTTTAACCGAGCTTGAGAGCGAGGAAGGGGGATTTAGAAAAGAGGGAGGCTCAGATATTCCTTTAAAAGGGTTCTTTTGTGGTAAGGAGATGACTGTACGGTTACAGAGAGATATTGAATTCCCGAAAAGATTTGATCTTACTCCTGCGATGATTTGTTCGCTGAAAAGCAATGTTGCAGCGTTTGCTGATGGTTATAAGGCCAGCTCAAAACAGGTCCAGTCAAATGCAGGAAAACTTCCTGTGATTAGCACTGTTTCGAAATTGGACTCTTCGTCTGTTTCTGTGACTGCAGTCCTTGGTGATCTGTCTGGTGACTCTCAGAATATGAATGACCAGGATGACTTTAACTCTGTGCTGAGTAAATTTCATGATCTAAATATTGATGAGAACTTGGAGTTTGTGGCAGAAGATGAGAAGAATTCGGTGATAGTCACTCTATTGCATCAGATAAAGGATCTTGAGAAACAGGTAAAGGAGCGGAAAGATTGGGCTCATGAGAAGGCAATCCAAGCTGCAAGAAAGCTTAACAGCTATCTAATTGAGCTGAAAACATTCAGGATAGAAAAAGAGGAGAGTCAAAGACTGAAGAAGGGGAAAGAGGAAAATGAGGAGCTTGAGGACCCTACCATGGTGAGACTCTTAGAAATGGAGGAGGCCTTGAGAAAGGCTTGTGGTCAAATGGATCTAGCAGCTGCAGGAGTCGGAAAACTTGAGGCGCAGAAAGCTGAAATCAAAGCAGAGTTAGAAGCTTGTAAATTAAGTGCATCAGAGTCAGTCGCAAGCTGCTTGCAAATTGCAAAAAGGGAGAAAAAGTGCTTAAAGAAGCTTCTGGCTTGGGAAAAACAGGAAGCGAAGATAAAACAGGATATTTCAGATGAAAAACAGAAGATTTTGGAGATACAAGAAGTGTTGGCTCAGATTAAAAAACGTGCAAAAGAAGCTGAGGTCATGAAGGGTGAAGAGTTAAAGGCTAAGGAGGAAGCCTTAGCACTGATTGAAGAGGAACGCCGTTCTGTGGAAGCAGCTGAGGCTAATAGAAAAAGAAATCTTAAGGCTTTAAGCCTGAAGATGGAGATTGATTTCCAGCGTCGCAAGGATGATCTCCTAAGACTGGAGCAGGAGATTTCGTGTCTTAAAGCATCTGCACAGTTGGCTATTTTGCCTACAAGTGAGTCTGAGGGTGCAGAGCCCCACAGAGAGATAATTGCTAAGCTTCTGCAAGAATTAGATAGTGTGCCAGATTTTTCTGGAAAAGAAGCCACCGGTAATACTGATAGAGAATGCATTATATGTGGAAAAGAGGAGGTTTCCGTAATTTTCTTGCCATGTGCACACCAAGTTATGTGTGCCAGTTGCAGTAAAGAGTATGGGAGAAATGGCAAAGCTATTTGTCCATGCTGTTGGGTTCCAATCGAACAGAGAATTCGTATATTTGGGGCAAGTTCGTAG 1902 0.4285 MNYRDNVLSDTPLWVLCNEVQMKDISLKCMEIIYNDTVSKLVALGHNEDIAVKAILHNVHCYGANDLATDLLHNTLACLTKGSLDMYESKPAFSDLKKLQEYTLMNLVFLLQEVRLELGEGDAMWCLLMSDYNVLKAITVHIPVVSMCPPPLTELESEEGGFRKEGGSDIPLKGFFCGKEMTVRLQRDIEFPKRFDLTPAMICSLKSNVAAFADGYKASSKQVQSNAGKLPVISTVSKLDSSSVSVTAVLGDLSGDSQNMNDQDDFNSVLSKFHDLNIDENLEFVAEDEKNSVIVTLLHQIKDLEKQVKERKDWAHEKAIQAARKLNSYLIELKTFRIEKEESQRLKKGKEENEELEDPTMVRLLEMEEALRKACGQMDLAAAGVGKLEAQKAEIKAELEACKLSASESVASCLQIAKREKKCLKKLLAWEKQEAKIKQDISDEKQKILEIQEVLAQIKKRAKEAEVMKGEELKAKEEALALIEEERRSVEAAEANRKRNLKALSLKMEIDFQRRKDDLLRLEQEISCLKASAQLAILPTSESEGAEPHREIIAKLLQELDSVPDFSGKEATGNTDRECIICGKEEVSVIFLPCAHQVMCASCSKEYGRNGKAICPCCWVPIEQRIRIFGASS* 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g0065 633 Coils Coil 385 405 - -
Pvu2g0065 633 Pfam Family of unknown function (DUF6592) 30 139 IPR046527 -
Pvu2g0065 633 ProSiteProfiles Zinc finger RING-type profile. 579 618 IPR001841 -
Pvu2g0065 633 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 567 630 IPR013083 -
Pvu2g0065 633 Coils Coil 473 503 - -
Pvu2g0065 633 PANTHER OS05G0141500 PROTEIN 10 632 IPR046934 -
Pvu2g0065 633 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 10 632 - -
Pvu2g0065 633 Coils Coil 441 468 - -
Pvu2g0065 633 SUPERFAMILY RING/U-box 559 625 - -
Pvu2g0065 633 Pfam Zinc finger, C3HC4 type (RING finger) 576 624 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g0065 Pvu-Chr2 714354 717830 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g0065 517 628 C3H Transcription Factor Family AT3G06140 30.986 3.26e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g0065 - - vra:106777712 1040.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g0065 2 714354 717830 Pvu3g2365 3 45014633 45020969 PCT