Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g0048 ATGGTTTGCACTGCCAATGATTTACAAGGATGGAAAGATTTTCCAAAGGGACTCAGGGTTCTTGTACTTGACGGAGATAGAAGTTCTGCTGCTGAGATAGGAGAACAGCTTCAGGCCATGGACTATAATGTTTCTATCTTCTATGACGAGAATGAAGCTTTGTCAGCAATATCGAGTAGTCCTGAAGGCTTCCATGTTGCCATAGTGGAGGTGAGTACAAGCAGTAGCCTTGGAGGTTTCAAATTTCTTGAGAATGCAAAGGACTTGCCTACCATTATGACTTCAAAGAACCAGTGCCTGAACACCACAATGAAGTGCATTGCGCTTGGTGCCGTTGAGTTCCTCAGTAAACCACTATCTGAGGACAAGCTCCAAAATATTTGGCAGCATGTTGTTCACAAGGCATTTAATGCTGGGGCAAATGGTCTGTCTGAATCACTAAAACCTGTCAAAGAATCTTTAGAATCGGTGCTGCATCTCCAAACAGGCAATGAACAAGATAAAACTCATAAAAGGACGATGTCAATTGATTTAGAGAATGTGTCCAAGTTTGGTGATGATGACAAAGAGCAATCTGTGTGTGATAAATATCCGGCTCCTTCAACCCCACAATTGAAACATGGAACACGTTTATTGGATGATGGAGATTGCCATGAGCAGACTAATTTCTCAACAGAAAAAGAAAGTGGGGAACATGATGGGGAGTGCAAATCAGTCGAAGCTTCATGTGAGAATCTGAATGCTGAAAGTTCTCCTCAACCAACTGAACCTGAGGAGACTCTGATTAAGGAGGAAGAGGATTTTGCCAATGGTTCCAAGGGCGAGAGAGCTGTTTCACCGAATCTACACAATGAAAAGTTTCTCACCAATGCAGATGGTCATACATCTTCAAAAAAGACCGGAGTACTTCATGATTCATGTGAGATTAAAGCTAATAGGAAGAAGATGAAAGTAGACTGGACGCCCGAGCTGCATAAAAAATTTGTAAAGGCTGTCGAACAACTAGGTATTGATCAAGCCATTCCTTCTAGAATATTGGAGATAATGAAAGTGGAAGGTTTGACAAGGCACAATGTGGCAAGCCATCTTCAGAAATATAGAATACACAAGAGACAAAGTGCACCTGGGGAAGAAGATAGAAAATGGCATAATCAAAGAGATGCAATGCAAAGGAGCTTTTATCTGCAGAGACCAATCATGGCCTACCCTTCCTATCATTCTAATCAAACCCTTTCTCCAGCTCCTATATATCCTATGTGGGGACAACCTGGAAGTCAAATGGCTGGCGTACAGATGTGGGGCTCTCCTGCATACCCCTTGTGGCATCCTACAGAAAGTTGGAACTGGAAGCCTTATCCGGGGATGCACGTGGATGCTTGGGGATGCCCATTGTTCCCACCTCCTCAAGCTCCTGGTTTTCCCTACAATCAAAATATACCTGGATTGCACACACCTAAAGCAGTGGATTATAGATTCGGCATGCCACGCAGTTCCTTTGAGCATCATCCGGCAGAGGAGGTGGTAGACAAGGTGGTGAAAGAAGCAATTAACAAGCCATGGCTGCCATTGCCCTTGGGACTCAAAGCTCCTTGCACGGATAGTGTGTTGGCTGAGCTCTCCAAACAAGGCATATCCAGCATCCCTCTTGGCAACAAGGGTTCTTCTGCTCCAAAACCCTGCTGA 1683 0.4421 MVCTANDLQGWKDFPKGLRVLVLDGDRSSAAEIGEQLQAMDYNVSIFYDENEALSAISSSPEGFHVAIVEVSTSSSLGGFKFLENAKDLPTIMTSKNQCLNTTMKCIALGAVEFLSKPLSEDKLQNIWQHVVHKAFNAGANGLSESLKPVKESLESVLHLQTGNEQDKTHKRTMSIDLENVSKFGDDDKEQSVCDKYPAPSTPQLKHGTRLLDDGDCHEQTNFSTEKESGEHDGECKSVEASCENLNAESSPQPTEPEETLIKEEEDFANGSKGERAVSPNLHNEKFLTNADGHTSSKKTGVLHDSCEIKANRKKMKVDWTPELHKKFVKAVEQLGIDQAIPSRILEIMKVEGLTRHNVASHLQKYRIHKRQSAPGEEDRKWHNQRDAMQRSFYLQRPIMAYPSYHSNQTLSPAPIYPMWGQPGSQMAGVQMWGSPAYPLWHPTESWNWKPYPGMHVDAWGCPLFPPPQAPGFPYNQNIPGLHTPKAVDYRFGMPRSSFEHHPAEEVVDKVVKEAINKPWLPLPLGLKAPCTDSVLAELSKQGISSIPLGNKGSSAPKPC* 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g0048 560 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 555 IPR044825 GO:0003700|GO:0045893
Pvu2g0048 560 SUPERFAMILY CheY-like 16 134 IPR011006 -
Pvu2g0048 560 MobiDBLite consensus disorder prediction 187 236 - -
Pvu2g0048 560 PANTHER TWO-COMPONENT RESPONSE REGULATOR-APRR2-LIKE PROTEIN 1 555 - -
Pvu2g0048 560 Pfam Response regulator receiver domain 20 126 IPR001789 GO:0000160
Pvu2g0048 560 SMART REC_2 18 128 IPR001789 GO:0000160
Pvu2g0048 560 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 315 370 IPR006447 GO:0003677
Pvu2g0048 560 ProSiteProfiles Response regulatory domain profile. 19 132 IPR001789 GO:0000160
Pvu2g0048 560 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 312 371 IPR017930 -
Pvu2g0048 560 Gene3D - 311 372 - -
Pvu2g0048 560 MobiDBLite consensus disorder prediction 209 236 - -
Pvu2g0048 560 Pfam Myb-like DNA-binding domain 318 367 IPR001005 -
Pvu2g0048 560 Gene3D - 18 145 - -
Pvu2g0048 560 SUPERFAMILY Homeodomain-like 314 371 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g0048 Pvu-Chr2 579047 585488 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g0048 1 548 Response Regulator Gene Family AT4G18020 47.586 1.82e-139 413
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Pvu2g0048 Response_reg 4.4e-08 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g0048 - - vun:114173738 1045.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g0048 2 579047 585488 Pvu3g2353 3 44865220 44871678 PCT