Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g0041 ATGGCGCTTTATCTTTTCTATACTTTTCTTGTTACCACCTTGATTTTCATGCAAACTCTGGCTGATACTTCATGCACCGATTGTTTCATTCATTCTCGAGCAGCATATTATCCAAATTCTGAAGAACACGGAACAGATGTAGGTGCATGCGGGTTTGGTTCCTTTGGTGCTACGGTCAATGGCGGGGATGTATCAGCTGCATCTTCTCTTTACCGAAGTGGTGTTGGTTGTGGCGCCTGTTACCAGGTGAGGTGTACCAACAGCGTCTATTGCTCAAACAATGGTGTGACTGCAGTTATAACTGACCAAGGTTCAAGTGACAACACAGATTTCATTCTTAGCAAACATGCCTTTAGCCGGATGGCTCAAACCACTGATGCAGCTGCTTCTCTACTAGCCCTTGGCGTGGTTGATATTGAATATAGACGTGTTTCATGCAGCTACCCAGATAAAAATATAACAATCAAGATAGACGAGAGCAGCAACAACCCTTACTATTTGGCTTTTGTGATTTGGTATCAACAAGGAAGGAGAGACATAACTGCTGTGCAGCTCTGTGAGACTCAAAACTTTGTGTGCAAGTTACTGGATCGGAGCCATGGAGCTGTGTGGACTGCTACCTCTCCACCAAGTGGACCTTTGTCTTTAAGAATGTTGTTTAGTGATGAAGAAGAGGAAGAAGAAACTTGGGTTGTTCCAGCAAATAACATACCTGGAGACTGGAAGGCTGGAGAAACATACGATTCAGGGGTACAAGTGAACCAATAG 768 0.4401 MALYLFYTFLVTTLIFMQTLADTSCTDCFIHSRAAYYPNSEEHGTDVGACGFGSFGATVNGGDVSAASSLYRSGVGCGACYQVRCTNSVYCSNNGVTAVITDQGSSDNTDFILSKHAFSRMAQTTDAAASLLALGVVDIEYRRVSCSYPDKNITIKIDESSNNPYYLAFVIWYQQGRRDITAVQLCETQNFVCKLLDRSHGAVWTATSPPSGPLSLRMLFSDEEEEEETWVVPANNIPGDWKAGETYDSGVQVNQ* 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g0041 255 Pfam Expansin C-terminal domain 153 232 IPR007117 -
Pvu2g0041 255 Gene3D - 17 147 IPR036908 -
Pvu2g0041 255 SUPERFAMILY Barwin-like endoglucanases 18 150 IPR036908 -
Pvu2g0041 255 PANTHER EXPANSIN-B3 7 254 - -
Pvu2g0041 255 Gene3D - 148 253 IPR036749 -
Pvu2g0041 255 SUPERFAMILY PHL pollen allergen 151 249 IPR036749 -
Pvu2g0041 255 PANTHER EXPANSIN-LIKE B1 7 254 - -
Pvu2g0041 255 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 47 151 IPR007112 -
Pvu2g0041 255 Pfam Lytic transglycolase 67 141 IPR009009 -
Pvu2g0041 255 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 165 249 IPR007117 -
Pvu2g0041 255 PRINTS Expansin/Lol pI family signature 46 64 IPR007118 GO:0005576
Pvu2g0041 255 PRINTS Expansin/Lol pI family signature 134 150 IPR007118 GO:0005576
Pvu2g0041 255 PRINTS Expansin/Lol pI family signature 235 249 IPR007118 GO:0005576
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g0041 Pvu-Chr2 546702 548215 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g0041 11 251 Expansin Gene Family AT4G17030 41.633 8.21e-58 182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g0041 - - gmx:100794009 489.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g0041 2 546702 548215 Pvu3g2347 3 44808997 44811091 PCT