Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2774 ATGAGAGGAAGGAGTTACAGTCCTTCGCCGCCGCGTTACAGCAGAAGAGGAGGAGGGAGGAGTCCCAGCCCTAGAGGCCGCTACCCTCCTCGTCCCCGACAACAAGATCTCCCTACAAGCCTTCTTGTTCGTAACCTTCGCCATGATTGCAGGCCCGAGGATCTTCGCAGACCTTTTGGTCAATTTGGTCCTCTCAAGGACATTTACCTGCCTAAGGATTACTACACTGGAGAACCTCGTGGATTTGGTTTTGTTCAATACGTCGATCCTGCTGATGCAGCCGATGCTAAATATCATATGGATGGTCAAGTTCTGCTTGGTCGGGAGCTCACTGTTGTCTTTGCTGAGGAGAATAGAAAGAAGCCAACTGAGATGAGGACAAGAGAGAGAAGGGGTCGATTTAATGATCGAAGGAGGTCTCCTCCTCGTTACTCTCGTTCACCCCGCTACTCTCGATCTCCACCACCACGCCATAGATCTCGTTCTCGCAGTCGTGACTATTATTCCCCTCCTAAACGAACGGAGTATTCTAGATCTGCCTCCCCTGAGGATAGAAAGTTCAGTCGAGAAAGATCATATTCGCAGCATAGTAGGGAGAGGTCATACTCACGCAGTCCACCTTATAATGGGGGCTCGAGGAGTCCTGCAAAGGCTCCAGTTCGGAGCAGAAGTCCAAGTCCGGACCGTGATGTTAGGGAACGAGCCCATGATAGGTCCCCCAGTCAGTGA 729 0.5144 MRGRSYSPSPPRYSRRGGGRSPSPRGRYPPRPRQQDLPTSLLVRNLRHDCRPEDLRRPFGQFGPLKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKYHMDGQVLLGRELTVVFAEENRKKPTEMRTRERRGRFNDRRRSPPRYSRSPRYSRSPPPRHRSRSRSRDYYSPPKRTEYSRSASPEDRKFSRERSYSQHSRERSYSRSPPYNGGSRSPAKAPVRSRSPSPDRDVRERAHDRSPSQ* 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2774 242 MobiDBLite consensus disorder prediction 118 242 - -
Pvu1g2774 242 MobiDBLite consensus disorder prediction 160 198 - -
Pvu1g2774 242 PANTHER SERINE/ARGININE-RICH SC35-LIKE SPLICING FACTOR SCL30A 1 229 - -
Pvu1g2774 242 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 41 110 IPR000504 GO:0003723
Pvu1g2774 242 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 1 229 - -
Pvu1g2774 242 Gene3D - 31 147 IPR012677 -
Pvu1g2774 242 SMART rrm1_1 40 113 IPR000504 GO:0003723
Pvu1g2774 242 MobiDBLite consensus disorder prediction 118 143 - -
Pvu1g2774 242 SUPERFAMILY RNA-binding domain, RBD 38 145 IPR035979 GO:0003676
Pvu1g2774 242 MobiDBLite consensus disorder prediction 223 242 - -
Pvu1g2774 242 MobiDBLite consensus disorder prediction 1 39 - -
Pvu1g2774 242 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 39 117 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2774 Pvu-Chr1 52045874 52048416 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2774 39 170 Eukaryotic Initiation Factors Gene Family AT4G34110 26.515 8.64e-10 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2774 K12900 - gmx:100775883 319.701