Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2769 ATGCAAACTTCGTGGGCTGATTTGGCTACTAATTCCGCGCCTGAAATTGCCGGAGCATCCAACACCACAGCTCCGTCGCGGCCCGTTTATGTGCCTCCTCATCTGAGGAACCGTGGAGCATCAGCATCAACGGAATCCTCCTCTGCTCCTCCACCACCCAATGTGAGTACTGATAACAATGCCGGATCACGGTGGGGTGCGCCCAGAAACGGGTGGGGGAACAGAAGTGGTGGTTGGGATCGGCGGGAAGTGAACCCCTTCGAAGATCAGGAGAATGCAGCTGAAGAGGGAGGAGCAGCTTTTGGCGAGGAGCAGGGAAACACGGGAATTAATTTTGATGCGTACGAGGACATTCCTGTTGAGACGAGCGGTGAAAACGTGCCCCCACCTGTGAATACTTTTGCGGAGATTGACTTGGGCGAGGCTCTTAATCAGAATATTAGACGCTGCAAATATGTTAAGCCAACGCCGGTCCAGCGGTATGGCATACCCATATCCCTTGGCGGACGGGATTTAATGGCTTGTGCGCAGACTGGTTCCGGAAAGACTGCGGCATTCTGTTTCCCTATTATCAGTGGCATTATGAGAGGTCAAGGGCAGCCCCTCCAGAGGCCCCCTCGCGGTGCCCGTACAGTCTATCCACTTGCCCTTGTTCTCTCGCCGACTAGGGAGTTATCCATGCAAATACATGAAGAGGCTAGGAAGTTTTCATACCAGACAGGGGTCAGGGTCGTTGTTGCCTATGGTGGAGCTCCTATAAACCAGCAGCTACGGGAACTTGAGAGAGGGGTGGATATTCTTGTTGCAACTCCAGGAAGATTGGTTGATTTGCTGGAGAGAGCTAGAGTTTCATTGCAGATGATCAAATATTTGGCCTTAGACGAGGCAGATAGAATGCTGGACATGGGTTTTGAACCACAAATAAGGAAGATTGTACAACAAATGGACATGCCTCCACCAGGTGCCAGACAGACTATGTTGTTCAGTGCCACATTTCCAAAAGAGATACAGAGTCTAGCCTCTGATTTCCTTTCAAATTATGTTTTTCTGGCTGTTGGAAGAGTGGGCTCAATTACCGATTTGATTGTCCAAAGAGTTGAGTACGTTCAAGAATCTGACAAAAGAAGTCACCTCATGGATCTTCTTCATGCGCAGAGGGAAAATGGTGTACAAGGAAAGCAAGCTTTGACTTTAGTTTTTGTGGAGACAAAGAAGGGAGCTGATGCTCTCGAGCACTGGTTGTGTCGTAATAATTTTCCGGCAACTACTATTCACGGTGACAGGACACAACAGGAAAGAGAATTGGCATTAAGATCATTTAAAACTGGCAACACTCCCATATTGGTGGCAACTGATGTGGCTGCACGTGGTCTTGACATTCCTCATGTTGCCCATGTAGTTAACTTTGAGCTTCCTAATGATGTTGACGATTATGTACACCGTATTGGAAGAACAGGGCGAGCAGGAAAGAAAGGCCTTGCAACTGCGTTCTTTAATGACAACAATGCTTCACTGGCTAGGCCTTTAGCAGATCTGATGCAAGAAGCGAATCAGGAAGTACCTGATTGGCTCTCTCGGTATGCTGCTCGCTCTACTTTTGGTGGTGGACGGAATCGTCGAAATGGAGGAGGCCGTTTTGGTGGCCGTGATTTTCGAAGAGAAGGTTCTTTTAGTAGGGGTGGCTCTGGTTACTACAGTACAGGAAACAACAGTGGTGGATATGGCACTTCTGGTGGGTATGGTGGAGGATTTGGTCCTGGGGTAACCAGTGCATGGGACTGA 1782 0.4893 MQTSWADLATNSAPEIAGASNTTAPSRPVYVPPHLRNRGASASTESSSAPPPPNVSTDNNAGSRWGAPRNGWGNRSGGWDRREVNPFEDQENAAEEGGAAFGEEQGNTGINFDAYEDIPVETSGENVPPPVNTFAEIDLGEALNQNIRRCKYVKPTPVQRYGIPISLGGRDLMACAQTGSGKTAAFCFPIISGIMRGQGQPLQRPPRGARTVYPLALVLSPTRELSMQIHEEARKFSYQTGVRVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIKYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGARQTMLFSATFPKEIQSLASDFLSNYVFLAVGRVGSITDLIVQRVEYVQESDKRSHLMDLLHAQRENGVQGKQALTLVFVETKKGADALEHWLCRNNFPATTIHGDRTQQERELALRSFKTGNTPILVATDVAARGLDIPHVAHVVNFELPNDVDDYVHRIGRTGRAGKKGLATAFFNDNNASLARPLADLMQEANQEVPDWLSRYAARSTFGGGRNRRNGGGRFGGRDFRREGSFSRGGSGYYSTGNNSGGYGTSGGYGGGFGPGVTSAWD* 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2769 593 Pfam DEAD/DEAH box helicase 156 338 IPR011545 GO:0003676|GO:0005524
Pvu1g2769 593 Gene3D - 353 532 IPR027417 -
Pvu1g2769 593 MobiDBLite consensus disorder prediction 39 64 - -
Pvu1g2769 593 CDD DEADc_DDX3_DDX4 133 356 IPR044763 GO:0003724|GO:0005524
Pvu1g2769 593 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE-LIKE PROTEIN 40 565 - -
Pvu1g2769 593 Gene3D - 88 352 IPR027417 -
Pvu1g2769 593 SMART ultradead3 151 365 IPR014001 -
Pvu1g2769 593 MobiDBLite consensus disorder prediction 1 83 - -
Pvu1g2769 593 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 215 504 IPR027417 -
Pvu1g2769 593 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 132 160 IPR014014 GO:0003724
Pvu1g2769 593 MobiDBLite consensus disorder prediction 1 27 - -
Pvu1g2769 593 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 163 350 IPR014001 -
Pvu1g2769 593 MobiDBLite consensus disorder prediction 534 564 - -
Pvu1g2769 593 Pfam Helicase conserved C-terminal domain 374 489 IPR001650 -
Pvu1g2769 593 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 377 528 IPR001650 -
Pvu1g2769 593 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 40 565 - -
Pvu1g2769 593 SMART helicmild6 408 489 IPR001650 -
Pvu1g2769 593 CDD SF2_C_DEAD 362 498 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2769 Pvu-Chr1 52017663 52023449 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2769 130 521 Eukaryotic Initiation Factors Gene Family AT3G19760 31.807 1.12e-61 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2769 K11594 - gmx:100781668 937.176
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2769 1 52017663 52023449 Pvu1g2769 1 52017663 52023449 ECH