Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2748 ATGATGATGATGGAGGGAACAGGGTCAACAGATCCGGCACCGTTCCTACTGAAGACATACGAGATGGTGGATGAATCATCCACCGATGAAATAGTATCATGGAGTTCAACCAATAACACCTTCATCGTCTGGAACCCTGCTGAATTCTCTCGTCTTCTTCTTCCCACTTTCTTCAAGCACAACAACTTCTCCAGCTTCATCCGTCAGCTCAATACATATGGATTCAGAAAAGTACACCCTGAGCGATGGGAGTTTGCCAATGAAGATTTTCTCAAAGATCAAAAGCATCTTCTAAACAATATTCACCGCAGAAAACCTATCCACAGTCACTCACTCACACAACCTGTTGTGGATTCAGAAAGGTCTGCATTTGAGGAACAAATACAGAAACTTTCACAGGACAACACCACCATTCAATCCAATATTCTCCGCTTCAAACACCTCCACTCCGCTGCCAACACTCATCTTCAAGATCTACGCCTGCGATTGGATGCCATGGAGGAGAGGCAGCAAAATTTGCTCACCGTCTTTCAAAAGGCTCTTCACAATCCTGCTCTTGTTCAACACATCACTCGCAAGATCGAGTCCATGGATTTGCTGGCCTATAACAAGAAAAGGCGATTACCTCCTCAGCTTCATGACCTTCACTTGCAGCCTCTTGCTGGAAACACCTTTGTTGAAAGATTTGGAATGGAATTTGGAAATGTTTCTCATCAAGATTTCTCCAATAAACTCGCACTGGAATTGTCACCTGTTGTTTCAGATACGAACTTGGTGGTGTCATGTAGTACACAGGGTTCAAATGAAGATGGAGAAAGGCCACATAAGATTATGCTACCTCAGATTGCACAAACTGGAGAATCTCTTCCATTTCAGATGCATTCTGCTGAGAGCCCCAAGTTGGACTCAAATTATGAAGATGGTGACAGTTATATATCCTGTCTTTTGAATCTATCTCTGGCATCTTCTCCGTTACAAGCCAAGAGAAATACATGCACAGATAAGTCCCCATCCCTAATAGACTGTCCAAAATTTGGAGAAGGATCAAAATTTTGTGGCAATGATAGTAAAGAATATGATGCTGGAGCTTCTTCAAGCAAAAATCTAAACGAGGTTACTAATTTAGCTGAGGCTCCCCCAACTGCTGCTCCAGTTAGAGTAAATGATGTGTTCTGGGAACAGTTCCTTACTGAAAGACCAGGCTGTGGAGACAATGAAGGCTCAATGTCCCCCCACAAAGTAAATGCTTATGTCGCTGAGCAAGATGAAGAACGCTCAGTTCATGGAATCGCTGGAAATGTTATGGACATGGATCACACACTCTGA 1326 0.4321 MMMMEGTGSTDPAPFLLKTYEMVDESSTDEIVSWSSTNNTFIVWNPAEFSRLLLPTFFKHNNFSSFIRQLNTYGFRKVHPERWEFANEDFLKDQKHLLNNIHRRKPIHSHSLTQPVVDSERSAFEEQIQKLSQDNTTIQSNILRFKHLHSAANTHLQDLRLRLDAMEERQQNLLTVFQKALHNPALVQHITRKIESMDLLAYNKKRRLPPQLHDLHLQPLAGNTFVERFGMEFGNVSHQDFSNKLALELSPVVSDTNLVVSCSTQGSNEDGERPHKIMLPQIAQTGESLPFQMHSAESPKLDSNYEDGDSYISCLLNLSLASSPLQAKRNTCTDKSPSLIDCPKFGEGSKFCGNDSKEYDAGASSSKNLNEVTNLAEAPPTAAPVRVNDVFWEQFLTERPGCGDNEGSMSPHKVNAYVAEQDEERSVHGIAGNVMDMDHTL* 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2748 441 Coils Coil 149 176 - -
Pvu1g2748 441 SUPERFAMILY "Winged helix" DNA-binding domain 11 104 IPR036390 -
Pvu1g2748 441 SMART hsfneu3 11 104 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pvu1g2748 441 Pfam HSF-type DNA-binding 15 104 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pvu1g2748 441 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 8 433 IPR027725 -
Pvu1g2748 441 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-5 8 433 - -
Pvu1g2748 441 PRINTS Heat shock factor (HSF) domain signature 15 38 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pvu1g2748 441 PRINTS Heat shock factor (HSF) domain signature 53 65 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pvu1g2748 441 PRINTS Heat shock factor (HSF) domain signature 66 78 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pvu1g2748 441 Gene3D - 8 105 IPR036388 -
Pvu1g2748 441 ProSitePatterns HSF-type DNA-binding domain signature. 54 78 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2748 Pvu-Chr1 51913229 51915272 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2748 15 439 HSF AT4G13980 46.389 1.60e-116 347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Pvu1g2748 HSF_DNA-bind 4e-30 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2748 K09419 - gmx:100816484 467.233
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2748 1 51913229 51915272 Pvu1g2748 1 51913229 51915272 ECH