Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2730 ATGGTTACTTTTAAAAGCTATTTAAGTTATAGAAGAACAGAGATCCCTTTCAGAATCTTCAGATTTCGTAGCACTTTCTTTTTATCACTGGAAGCTACATGCTGGCATATATATGGTGACTTGAGATATTATCATTCTGGGTCAGAATGGGGTAAAAATCAGAAATTGAATCCAAACGAGAAGCCAAACAGGGTGGGACTTTTCTGGGACTTGGACAATAGACCACCCAATGCAATCCCACCTTATGAAGTTGCCAATAAGCTGAGAATAGCTGCATCTTCCTTTGGGATTGTTCGGTACATGGTGGCTTATGCAAATAGCCACACCTTTAGTCATGTTCCTCAATCTGTACGGGAGAAAAGGGAAGAGAGGGAAAAGTTGCATCGTTTAGAGAACAAGGGTGTCATCAAGCGAAATGAACCTTATCGTTGTCGGGTTTGTGGGAGAAAGTTTCATACTAATGACAAGCTTGTCAACCATTTCAAGCAACTGCATGAGCGCGAGCACAGGAAAAGGATGAGCCAGATTGAGTCTGCTAGAGGGAGCAGGAGGGTGAAGTTGGTGGCTAAGTATTCTATGAAAATGGAAAAGTACAAGAAGGCTGCAAGTGCTATTCTCACACCCAAAGTGGGATATGGTTTGGCAGATGAGCTCACACGGGCTGGGTTTTGGGTTCAAACTGTGTCTGATAAGCTACAAGCTGCAGATCGAGCATTGCAAAGCCACATTGTGGATGTCATGGATCATAGGCAGGTTGAGTGTGTGGTTCTTGTGTCTGATGATTCTGATTTTGTCGATGTGATAAAGGAAGCAAGGCAGCGATGTCTCAAGACGGTTGTCATTGGGGATATTGATGATGGTGTCTTGAAGAGGACTGCTGATACTGCCTTTTCTTGGGTGGAAATTCTGATGGGAAAGGCTAAGAAACAGGCTGTTTCAGTTGTAAAAAAATGGAAGGATCGTGATATTTTAAAGAGGATAGACTGGACATGTAACCCAGATGCGGATGAAAAGAAATATAATGTGGATGATACCATTGCTGAAACATCAGAAGATGATAATTTTGAAGATACCTGTGATGAAGTTGATGATGTCTATAAGGATGACAGAGGTTCTTGGTGGGAATTAGATTCTGACAATGATGTCACAAAGAGACAGTCAGGCTAA 1167 0.4207 MVTFKSYLSYRRTEIPFRIFRFRSTFFLSLEATCWHIYGDLRYYHSGSEWGKNQKLNPNEKPNRVGLFWDLDNRPPNAIPPYEVANKLRIAASSFGIVRYMVAYANSHTFSHVPQSVREKREEREKLHRLENKGVIKRNEPYRCRVCGRKFHTNDKLVNHFKQLHEREHRKRMSQIESARGSRRVKLVAKYSMKMEKYKKAASAILTPKVGYGLADELTRAGFWVQTVSDKLQAADRALQSHIVDVMDHRQVECVVLVSDDSDFVDVIKEARQRCLKTVVIGDIDDGVLKRTADTAFSWVEILMGKAKKQAVSVVKKWKDRDILKRIDWTCNPDADEKKYNVDDTIAETSEDDNFEDTCDEVDDVYKDDRGSWWELDSDNDVTKRQSG* 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2730 388 CDD PIN_LabA-like 153 283 - -
Pvu1g2730 388 PANTHER - 53 383 - -
Pvu1g2730 388 ProSiteProfiles Zinc finger C2H2 type domain profile. 142 170 IPR013087 -
Pvu1g2730 388 PANTHER ZINC FINGER (C2H2 TYPE) FAMILY PROTEIN 53 383 - -
Pvu1g2730 388 ProSitePatterns Zinc finger C2H2 type domain signature. 144 165 IPR013087 -
Pvu1g2730 388 SUPERFAMILY beta-beta-alpha zinc fingers 138 168 IPR036236 -
Pvu1g2730 388 SMART c2h2final6 142 165 IPR013087 -
Pvu1g2730 388 Gene3D Classic Zinc Finger 111 204 - -
Pvu1g2730 388 Coils Coil 113 133 - -
Pvu1g2730 388 Pfam NYN domain 214 294 IPR021139 GO:0004540
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2730 Pvu-Chr1 51818072 51819455 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2730 59 382 C2H2 Transcription Factor Family AT4G12240 59.633 2.74e-137 394
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pvu1g2730 NYN 7.8e-08 CL0280
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2730 - - gmx:100785257 626.706