Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2714 ATGCCACCGGGTTTGGAGTATAACATCGATGATCTGTTCCAAGAAGCTAGGAAGCGATGGCTCAAGCCTGTGGAAGTGCTTTGCATTTTACGGAATTACGACATGTGCGAGCTTACCCACCAGCCCCCTCATCAGCCAGCTGGTGGATCCCTATATCTGTTTAATAAAAGAGTCACGCGTTTCTTCCGTAAAGATGGTCATAACTGGCGGAAGAAAAGAGATGGAAGAACTGTGGGAGAAGCACATGAACGGCTTAAGGTTGGAAATGAAGAAATCCTAAACTGCTACTATGCACATGGAGAGGAGAACCGTACTTTTCAGAGACGTAGCTATTGGATATTGGAGCCGGAATATGAGCATATTGTTCTGGTGCATTATAGAGAAACAAGTAAGGGGAAATCCAATTCTGAACCTGTCACACAATTGTCATCGGGTTCCTCTCTTGTTTTTAGTCAGAGTCACAGCCTGTATACTGCTCAAAATCCAGGGACATCATCCGTGTTTGGAGATTCATGTGAACCTAATCTCAATTTCTCTAGTCCTGGGTCTTTAGAAGTTACATCTGAAGCACAAGCCTTGCGCCAATTGGAAAAAGAGCTGAATATAAATGAGGACAGCTTCAGTGAAAGGTTGTCTGAACAAAATGATCAAGGGCAACTTTTTGTTATGTATAGTGAAGGACAAGATAACAGTGACACATACTATCATGACTCAATTGATGATTGTCCTGATGGAAAAGAAAAAACTATATACTGGACCGAGGTGCTTGAAGCATTCCAGCCCTTACCTGTGACCAATATACCAGATCAATATGTATATGAGGCATTTGAAAATGAAGAGTCATTATTTTCTTCAGGAAGGGAAATGATTGCCAACGTGGAAAACAATCAGTGGCTAAACTCCAACAGTAATAATGTTGAGAACTCTGTTTTTCCACTTCCTCAAGGCAACAATGGAGTCAAATTTCCTCTATGTTCTCTGGTAGAAACTCCCGTAACTATCTCTGACTACTATGAACCATTTTTTGACCAAACCCAAATTCAAGAACCTCTTGGTGGTGTAGATTCAAGCTTGACTGTTGAACAGAAACAGAAATTTACTATTAGGGCAGTCTCCCCAGAATACTGCTATGCCACTGAGACTACAAAGGTTATCATTATTGGATCATTTCTCTATCATCACTTGGATTCTACCTGGGCCTGTATGTTTGGTGATGTTGAAGTTCCTGCTGAGATTATTCAGGATGGCGTAATTTGTTGTGAAGCTCCATCCAATCTTGTTGGAAAGGTTAATCTGTGCGTTACTTCCGGAAATAGGGTGCCTTGCAGTGAAGTGAGTGAGTTTGAGTTTCGAAATAAGACTACTAGTTGCACTCGCTGCAATTCGTTGGAAACAGAAGATGGTAGAAGTCCAGAAGATCTGCTATTACTTGTTCGATTTGCGGAGATGCTCCACTCTGCTTCAACAACAGAATCTGGAAGTCATCTTTCAACAGAACAGAAAGATAGTGATGATTCATGGAGCCATATTATTGACACTCTCCTAGTTGGCACTGGAAAATCATCTGATACTGTTAACTGGCTTCTAGAAGAGCTGCTGAAGGATAAGCTGCAGCACTGGCTCTCTAACCGATCCAATGAAAGAGATGAAGGGACAGACTGTTCTTTGTCCAAGAAAGAGCAGGGGATTATACACATGGTTTCTGGGTTGGGTTTTGAGTGGGCCCTGAACCCCATTCTCAATTGCGGTGTGAATATAAATTTCCGTGACATCAATGGATGGACCGCCCTTCATTGGGCTGCACGGTTTGGGAGGGAAAAAATGGTTGCTTCACTTATTGCTTCTGGTGCATCTGCTGGAGCGGTGACAGATCCAAGTTCACAAAATCCAAGCGGTGAAACTGCTGCATCTGTTGCAGCCTCCCATGGCCATAAGGGACTAGCAGGTTATCTTTCTGAGGTAGACCTAACCAGCCACTTGTCATCCCTCACATTGACAGGGAGTAAGATTTCTAAAGGACCTTCTGAGCTTGCAGCCGAGTTAACTGTCTGTAGTGTCTCTAAAGAAAATCTTGTGGCCAGTGAGGATCAGGTTTCACTAAAAGCTTCCTTGGATGCTGTCAGAAATGCAGCTCAGGCAGCTGCACGGATACAAGATGCTTTTCGTGCACATTCTTTTAGAAAACGGAAACAAAGAGAAGCTGCAGCTGCTGTGGCACGTCTAGAGGGATATTGTATTAGTCCAGGTTGCAATGATGATAACATTTCAGTGCTTTCTGCCATGTCAAAACTTAGTTCTCGGAGCTTGGGTGATTGCAATTTAGCTGCCTTGTCGATTCAGAAGAGATATCGAGGTTGGAAAGATCGCAAACAATTCTTAGCATTGCGCCAGAAAGTAGTTAAGATACAGGCCATTGTAAGGGGTTACCAGGCTCGGAAGCAATACAAGATAATATTATGGGCAGTTGGAATCTATAATAAGGTTGTGCTACGATGGAGGAGAAAACGCGTTGGTATAAGTAGTGTCCGGCAAGAAATGGATTCAAATGAAGAAGGAAGTGATGATGAAGATTTTCTCAACGTGTTCCGAAAAGAGAAAGTAAATGCAGCAATTGAGAAGGCTTTGAAGCGGGTGCTTTCCATGGTCCGTCATGACGATGCTCGTCACCAATACAGGCGCTTACTTTCATTGTATCGTCAAGCCAAGACTGAAAGTGAGAGCACAATTGATGAAGCACCGTTATCAACTTCGGAAGAGGATGTTTTCCATATAGAAGACGATGATTTGAATACGTTATTGGATAAGGTTTGGGCTTCGGAAGAGGATGGTTTCAATATGGATGCTTTCAGTATGATAGACAATGATTTGAGTCAGTCATCGTGGGAAAAGTATTGGAGTTAG 2901 0.4278 MPPGLEYNIDDLFQEARKRWLKPVEVLCILRNYDMCELTHQPPHQPAGGSLYLFNKRVTRFFRKDGHNWRKKRDGRTVGEAHERLKVGNEEILNCYYAHGEENRTFQRRSYWILEPEYEHIVLVHYRETSKGKSNSEPVTQLSSGSSLVFSQSHSLYTAQNPGTSSVFGDSCEPNLNFSSPGSLEVTSEAQALRQLEKELNINEDSFSERLSEQNDQGQLFVMYSEGQDNSDTYYHDSIDDCPDGKEKTIYWTEVLEAFQPLPVTNIPDQYVYEAFENEESLFSSGREMIANVENNQWLNSNSNNVENSVFPLPQGNNGVKFPLCSLVETPVTISDYYEPFFDQTQIQEPLGGVDSSLTVEQKQKFTIRAVSPEYCYATETTKVIIIGSFLYHHLDSTWACMFGDVEVPAEIIQDGVICCEAPSNLVGKVNLCVTSGNRVPCSEVSEFEFRNKTTSCTRCNSLETEDGRSPEDLLLLVRFAEMLHSASTTESGSHLSTEQKDSDDSWSHIIDTLLVGTGKSSDTVNWLLEELLKDKLQHWLSNRSNERDEGTDCSLSKKEQGIIHMVSGLGFEWALNPILNCGVNINFRDINGWTALHWAARFGREKMVASLIASGASAGAVTDPSSQNPSGETAASVAASHGHKGLAGYLSEVDLTSHLSSLTLTGSKISKGPSELAAELTVCSVSKENLVASEDQVSLKASLDAVRNAAQAAARIQDAFRAHSFRKRKQREAAAAVARLEGYCISPGCNDDNISVLSAMSKLSSRSLGDCNLAALSIQKRYRGWKDRKQFLALRQKVVKIQAIVRGYQARKQYKIILWAVGIYNKVVLRWRRKRVGISSVRQEMDSNEEGSDDEDFLNVFRKEKVNAAIEKALKRVLSMVRHDDARHQYRRLLSLYRQAKTESESTIDEAPLSTSEEDVFHIEDDDLNTLLDKVWASEEDGFNMDAFSMIDNDLSQSSWEKYWS* 967
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2714 966 SUPERFAMILY E set domains 367 451 IPR014756 -
Pvu1g2714 966 ProSiteProfiles Ankyrin repeat region circular profile. 592 618 - -
Pvu1g2714 966 ProSiteProfiles IQ motif profile. 773 801 IPR000048 GO:0005515
Pvu1g2714 966 ProSiteProfiles IQ motif profile. 710 739 IPR000048 GO:0005515
Pvu1g2714 966 SMART iq_5 709 731 IPR000048 GO:0005515
Pvu1g2714 966 SMART iq_5 794 816 IPR000048 GO:0005515
Pvu1g2714 966 SMART iq_5 771 793 IPR000048 GO:0005515
Pvu1g2714 966 Pfam IPT/TIG domain 367 438 IPR002909 -
Pvu1g2714 966 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 771 822 IPR027417 -
Pvu1g2714 966 SMART ANK_2a 592 621 IPR002110 GO:0005515
Pvu1g2714 966 SMART ANK_2a 631 660 IPR002110 GO:0005515
Pvu1g2714 966 Pfam IQ calmodulin-binding motif 797 816 IPR000048 GO:0005515
Pvu1g2714 966 Pfam IQ calmodulin-binding motif 775 792 IPR000048 GO:0005515
Pvu1g2714 966 ProSiteProfiles CG-1 DNA-binding domain profile. 9 135 IPR005559 GO:0003677
Pvu1g2714 966 Gene3D - 528 660 IPR036770 -
Pvu1g2714 966 SUPERFAMILY Ankyrin repeat 563 653 IPR036770 -
Pvu1g2714 966 Gene3D Immunoglobulins 361 456 IPR013783 -
Pvu1g2714 966 ProSiteProfiles Ankyrin repeat profile. 592 624 IPR002110 GO:0005515
Pvu1g2714 966 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 1 935 - -
Pvu1g2714 966 Pfam CG-1 domain 15 128 IPR005559 GO:0003677
Pvu1g2714 966 PANTHER CALMODULIN-BINDING PROTEIN 1 935 - -
Pvu1g2714 966 Gene3D - 772 819 - -
Pvu1g2714 966 SMART CG_1_2 12 130 IPR005559 GO:0003677
Pvu1g2714 966 ProSiteProfiles IQ motif profile. 795 819 IPR000048 GO:0005515
Pvu1g2714 966 Pfam Ankyrin repeats (3 copies) 575 652 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2714 Pvu-Chr1 51711829 51722211 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2714 252 933 CAMTA Transcription Factor Family AT1G67310 53.535 0.0 614
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Pvu1g2714 CG-1 3.5e-46 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2714 K21596 - gmx:100791430 1404.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2714 1 51711829 51722211 Pvu2g1778 2 32095502 32104715 PCT