Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2710 ATGGAGTGGAATGCAAAATCTCTCGGACAATGGGACTGGGAGCACTTGTTCTTCTTCAATACAAAAGCAACAGAAAATCCCAGGTTGCCACCAACTGATTGTAGCAGCGAAGCAGATCGAGAACTCAATGCTGGGGTGTTGTATCCATCAGGTGGTAGTGCTTGTTCTGGCTCTGAACTAGTGCATGCTTCTTCACCAAGGAGCTCAAAATCAGCTTCTAACAATTCATCCTCAAATGGGGATAGCAAGGCATCAGTGTTGACCCTGGAAGGTTCTCAGGATGATTCCACTGGGAAGAAAGAATTGTGCAGTGGAGAGCCAGTTGAAACATCTCAATCAGCAGAGCCTTCTCCAGTCTCTGGGGAACCCCTTCTGACTCTGAAGCTTGGCAAACGGTTGTACTTTGAGGATGTATGTGCAGGAAGTGATTCCAAGAAACCATCTTCCTTTGAGGCTCCCGTTTCATCAGGAAAGAAATACAAAACCAGTAGTCAGAATTTGCAGCATCCAAGTTGCCAGGTAGAAGGCTGTGGCCTTGACCTCTCATCTGCTAAAGATTACCATCGCAAACACAGAGTATGTGAAGCTCATTCCAAATCCCCTAAGGTGCTTATAGCTGGTTTGGAGCGCAGATTTTGCCAGCAATGTAGCAGGTTCCATGCTCTGTCAGAGTTTGATGACAAAAAAAGAAGCTGCAGAAAACGTCTTTCAGATCACAATGCAAGGCGTCGCAAACCGCTGCCTGACTCAATCCAGTTAAATCCATCAGCTTTGTCTTCATCACCTTATGATGGAAGGCAAATAATGAGCCCATTTGCATTTTCAAGAACTGGTACAAACTTGGTGTGGCAGGATGTGCACAGCAGCAAGCTCCCCCAGACAAAAGATTTTCTTCCGAAGCCTGTAAAAGCCAACAATAAGATACCCAGCATTGTCTCTATGTTTTCTGATGATTCTAGTGGCCTTCTAACATCCAGAAGTATAGCAGCCAAGACTATTATTCCAGGTTTAGAAGATCCGAATCCCATTACTTCGTGTGATCTAAATGGTGCACAAGATGTTAACCGTGCTCTCTCTCTTCTGTCAAGCAATTCATGGGCTCCATATGAGACTAAGTCACTATCCTCTCGAACCAGTGGCATCACTCAGGCCATAACACAATCAATGACGCACCACCACCAGCGTTCACCATTTGCTTCCTCTTCAGAATTCTGGCACACTGATCATCAACAACAACCATCTCCTTCCACCATGACCATGTGTATCTCAATCTCAGATTATGATACCAACAATCGAATTCAAGACTTTCAGCTGTTGAGTGCACCCTTTGACTCGGGTTTTCCATGCAACCATCTCGATTGA 1362 0.4515 MEWNAKSLGQWDWEHLFFFNTKATENPRLPPTDCSSEADRELNAGVLYPSGGSACSGSELVHASSPRSSKSASNNSSSNGDSKASVLTLEGSQDDSTGKKELCSGEPVETSQSAEPSPVSGEPLLTLKLGKRLYFEDVCAGSDSKKPSSFEAPVSSGKKYKTSSQNLQHPSCQVEGCGLDLSSAKDYHRKHRVCEAHSKSPKVLIAGLERRFCQQCSRFHALSEFDDKKRSCRKRLSDHNARRRKPLPDSIQLNPSALSSSPYDGRQIMSPFAFSRTGTNLVWQDVHSSKLPQTKDFLPKPVKANNKIPSIVSMFSDDSSGLLTSRSIAAKTIIPGLEDPNPITSCDLNGAQDVNRALSLLSSNSWAPYETKSLSSRTSGITQAITQSMTHHHQRSPFASSSEFWHTDHQQQPSPSTMTMCISISDYDTNNRIQDFQLLSAPFDSGFPCNHLD* 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2710 453 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 21 452 IPR044817 GO:0003677
Pvu1g2710 453 Pfam SBP domain 172 245 IPR004333 GO:0003677
Pvu1g2710 453 MobiDBLite consensus disorder prediction 148 169 - -
Pvu1g2710 453 MobiDBLite consensus disorder prediction 57 93 - -
Pvu1g2710 453 Gene3D - 162 233 IPR036893 GO:0003677|GO:0005634
Pvu1g2710 453 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 2 21 452 - -
Pvu1g2710 453 MobiDBLite consensus disorder prediction 236 260 - -
Pvu1g2710 453 MobiDBLite consensus disorder prediction 391 416 - -
Pvu1g2710 453 ProSiteProfiles Zinc finger SBP-type profile. 169 246 IPR004333 GO:0003677
Pvu1g2710 453 MobiDBLite consensus disorder prediction 141 169 - -
Pvu1g2710 453 SUPERFAMILY SBT domain 170 251 IPR036893 GO:0003677|GO:0005634
Pvu1g2710 453 MobiDBLite consensus disorder prediction 24 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2710 Pvu-Chr1 51688214 51691903 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2710 1 367 SBP-box Gene Family AT5G43270 40.104 4.77e-62 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Pvu1g2710 SBP 6.7e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2710 - - gmx:100781289 704.516
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2710 1 51688214 51691903 Pvu1g2710 1 51688214 51691903 ECH