Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2693 ATGGTGAAATACTCCAGAGAACCCGATAATCCTACCAAGTCCTGCAAGGCAAGAGGCGCGGACCTCAGAGTGCATTTCAAGAACACTAGGGAGACTGCGTTTGCAATCAGGAAGTTGCCCCTTGTTAAAGCCAAAAGGTACTTGGAGGATGTATTGGCCCACAAACAAGCCATCCCTTTCCGTCGATTCTGCCGTGGTGTTGGGAGGACTGCTCAGGCCAAGAGCAGACACTCCAATGGACAAGGACGCTGGCCCGTCAAATCAGCTAAATTCATCCTGGATTTGCTGAAGAATGCTGAGAGTAATGCTGAAGTTAAAGGTTTGGACGTAGATGCTCTTTACATTTCCCATGTCCAGGTTAATCAAGCACAGAAGCAAAGACGCCGTACCTACAGAGCCCATGGAAGAATCAACCCTTACATGTCATCTCCCTGCCATATTGAGCTGATATTATCTGAGAAGGAAGAGCCTGTGAAGAAAGAGCCCGAGACCCAATTGGCAACAAGCAAGAAGAAGGGTGCTCTCCGTAGTGGTGCTTCATCTTAA 546 0.4835 MVKYSREPDNPTKSCKARGADLRVHFKNTRETAFAIRKLPLVKAKRYLEDVLAHKQAIPFRRFCRGVGRTAQAKSRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHVQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKKKGALRSGASS* 182
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2693 181 SUPERFAMILY Ribosomal protein L22 1 154 IPR036394 GO:0003735|GO:0005840|GO:0006412
Pvu1g2693 181 TIGRFAM uL22_arch_euk: ribosomal protein uL22 4 154 IPR005721 GO:0003735|GO:0006412|GO:0015934
Pvu1g2693 181 MobiDBLite consensus disorder prediction 154 181 - -
Pvu1g2693 181 PANTHER 60S RIBOSOMAL PROTEIN L17-2-LIKE 1 181 - -
Pvu1g2693 181 Hamap 50S ribosomal protein L22 [rplV]. 2 154 IPR005721 GO:0003735|GO:0006412|GO:0015934
Pvu1g2693 181 PANTHER 60S RIBOSOMAL PROTEIN L17 1 181 IPR005721 GO:0003735|GO:0006412|GO:0015934
Pvu1g2693 181 CDD Ribosomal_L22 15 151 IPR001063 GO:0003735|GO:0005840|GO:0006412
Pvu1g2693 181 Pfam Ribosomal protein L22p/L17e 17 152 IPR001063 GO:0003735|GO:0005840|GO:0006412
Pvu1g2693 181 Gene3D Ribosomal protein L22/L17 1 180 IPR036394 GO:0003735|GO:0005840|GO:0006412
Pvu1g2693 181 ProSitePatterns Ribosomal protein L22 signature. 127 151 IPR018260 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Pvu1g2693 Pvu-Chr1 51588666 51590665 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2693 1 174 Cytoplasmic Ribosomal Protein Gene Family AT1G27400 90.230 4.17e-119 332
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2693 K02880 - gmx:100800781 349.747
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2693 1 51588666 51590665 Pvu2g1793 2 32426672 32429993 PCT