Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2686 ATGGATATTGCCGAGGTTGAAGAAAATCTTTTTGCAGCAAGCGATGCCAAGTTACATGGAGAAATGTGCAAGTGTCTTTCTGCAATATACTGCAAGATATTGTTATTATTTCCTTCTTTAGAAGCAGCTAGGCCTAGGAGCAAATCTGGAATTCAGGCATTATGCTCATTGCATGTAGCCTTAGAAAAGGCAAAGAATGTTCTTCGACACTGCTCAGAATCTAGTAAACTTTACTTGGCTATAACCGCGGATTCTGTTCTTCTAAAATTTGAAAAGGCTAAATGTGCTCTTGAGGATAGTCTTAAACGAGTGGAAGATATTGTTCCTCAATCTATTGGTTGTCAGATTGATGAAATTGTGAATGAACTTTCAAGTACGGTATTTGCACTTGATCCGTCAGAGAAGCAAGTTGGGGATGATTTAATTGCATTGCTTCAAAAGGGAAGAAAGCTTAATGACTCTAATGACAGTGGTGAACTTGAATGTTTTCATCTAGCTGCTACTACTATTGGAATCACTTCTTCAAGAGCAGCTCTTGCAGAAAGAAGATCTCTAAAAAAACTCATAGAAAGAGCTCGAGCTGAGGATGATAGGCGGAAAGAATCAATTATTGCTTACCTTTTACACCTTATGAGGAAATATTCCAAATTATTTAGAAGTGAGTTCTCTGATGATAATGATTCTCAGGGTTCTCAACCTTGTTCTCCCACTGTTCAGAGATCTCTTGAGGATGGCAGTACTGGTGGTCATTGTCATGTCTTTGACAGACAGCTTTCAAAACTTAGTTCCTTTAACTTTAAGCCAAGTAATAGGGAATCAGGGCAGATGCTCGCTTTGCCTGAAGAGTTACGATGCCCAATATCTCTGCAACTTATGAGTGATCCTGTTATAATTGCTTCTGGGCAAACATATGAAAGGGTTTGCATAGAGAAATGGTTTAGAGATGGGCACAAGACCTGCCCAAAGACGCAACAGAAACTTTCACATCTTTCATTGACTCCTAATTACTGTGTTAAGGGTCTTGTGGCTAGTTGGTGTGAACAGAATGGAGTTGCTATTCCTGAAGGTCCTCCTGAATCTCTTGATTTTAACTACTGGAGGTTGGCATTATCAGATACTGAATCCACAAATTCAAGATCTGCAAACAGTGTTGGCTCTTTCCAGTTGAAGGGTGTCAAAGTTGTTCCTGTAGAAGAGAGTGGTATCTCAGAGCAAATGGGGGGGAAAGCAGCTGAAGATTTTTCTGCACAAGAGGAAGATCATGAGCGGTATCTTAGTTTTCTTAAAGTCTTGTCAGAAGGGGACAATTGGAAGAGGAAGTGCAAAGTTGTTGAACAGTTGAGGCTGTTGCTGCGTGATGACGAGGAAGCCAGGATTTTTATGGGGGCTAATGGATTTGTTGATGCACTTATGCAATTTCTGCAATCAGCTGTGCACGAAGGAGATGTGACGGCTCTTGAAAATGGAGCCATGGCTCTGTTCAACCTGGCTGTGAATAACAACAGAAATAAGGAAATTATGTTATCAGCAGGAATCCTGTCGCTGTTGGAGGACATGATATCAAAAACTAGTTCCTATGGTTGTGTAGCCGCCCTGTATCTGAATCTTTCTTGCCTTGAAGAAGCCAAGGACGTGATCGGCACGAGTCAGGCTGTCCAGTTCCTTATCCAGATTCTTCACACCAAGACAGAAGTCCAGTGCAAGATAGATTCCCTCCATGCACTCTATAACCTTTCTACTTTGTCCTCCAACATTCCACATCTCCTTTCATCTGGCATCATTGATAGCCTACAATCCCTTCTTGTAGTAGACCAGGGTGATTGCACTGTGACAGAAAAATGCCTCGCTGTTTTGATAAATTTGGCTGTTTCTCCAGCAGGAAGAGAGCAAATGATGATGGCTCCTGCACTCATAAGTGCCTTGGCTTCCACGCTGGATACCGGCGAGCTCATGGAGCAGGAGCAAGCCGCCTCTTGTCTCCTGATTTTGTGTAACAGAAGTGAGCAATGTTGTGAGATGGTCTTGCAAGAAGGGGTTATCCCTGCGTTGGTGTCATTAACAGTGAATGGAACCTCGAGAGGAAGAGAAAAGGCTCAGAAACTCTTGATGGTGTTCCGAGAGCAGCGACAACGGGAGCATTCACCTGTTAAGACAAATGAATGTGAACCTGAAAGTAGTGCTTTGTCTATGCCTCCTCCTGAAACGAAACCGTTATGTAAATCAATATCTAGAAGAAAGGTGGTAGGGAAAGCTATTAGCTTTCTCTGGAAAAGCAAGAGCTATTCTGTTTACCAGTGTTAA 2301 0.4224 MDIAEVEENLFAASDAKLHGEMCKCLSAIYCKILLLFPSLEAARPRSKSGIQALCSLHVALEKAKNVLRHCSESSKLYLAITADSVLLKFEKAKCALEDSLKRVEDIVPQSIGCQIDEIVNELSSTVFALDPSEKQVGDDLIALLQKGRKLNDSNDSGELECFHLAATTIGITSSRAALAERRSLKKLIERARAEDDRRKESIIAYLLHLMRKYSKLFRSEFSDDNDSQGSQPCSPTVQRSLEDGSTGGHCHVFDRQLSKLSSFNFKPSNRESGQMLALPEELRCPISLQLMSDPVIIASGQTYERVCIEKWFRDGHKTCPKTQQKLSHLSLTPNYCVKGLVASWCEQNGVAIPEGPPESLDFNYWRLALSDTESTNSRSANSVGSFQLKGVKVVPVEESGISEQMGGKAAEDFSAQEEDHERYLSFLKVLSEGDNWKRKCKVVEQLRLLLRDDEEARIFMGANGFVDALMQFLQSAVHEGDVTALENGAMALFNLAVNNNRNKEIMLSAGILSLLEDMISKTSSYGCVAALYLNLSCLEEAKDVIGTSQAVQFLIQILHTKTEVQCKIDSLHALYNLSTLSSNIPHLLSSGIIDSLQSLLVVDQGDCTVTEKCLAVLINLAVSPAGREQMMMAPALISALASTLDTGELMEQEQAASCLLILCNRSEQCCEMVLQEGVIPALVSLTVNGTSRGREKAQKLLMVFREQRQREHSPVKTNECEPESSALSMPPPETKPLCKSISRRKVVGKAISFLWKSKSYSVYQC* 767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2686 766 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 279 353 IPR013083 -
Pvu1g2686 766 ProSiteProfiles U-box domain profile. 278 352 IPR003613 GO:0004842|GO:0016567
Pvu1g2686 766 SMART Ubox_2 282 345 IPR003613 GO:0004842|GO:0016567
Pvu1g2686 766 SMART arm_5 581 623 IPR000225 GO:0005515
Pvu1g2686 766 SMART arm_5 539 580 IPR000225 GO:0005515
Pvu1g2686 766 SMART arm_5 454 498 IPR000225 GO:0005515
Pvu1g2686 766 SMART arm_5 624 665 IPR000225 GO:0005515
Pvu1g2686 766 CDD RING-Ubox_PUB 283 325 IPR045210 -
Pvu1g2686 766 Coils Coil 175 195 - -
Pvu1g2686 766 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 465 511 IPR000225 GO:0005515
Pvu1g2686 766 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 750 - -
Pvu1g2686 766 MobiDBLite consensus disorder prediction 224 243 - -
Pvu1g2686 766 Pfam U-box domain 280 349 IPR003613 GO:0004842|GO:0016567
Pvu1g2686 766 PANTHER U BOX DOMAIN-CONTAINING 1 750 - -
Pvu1g2686 766 SUPERFAMILY ARM repeat 427 707 IPR016024 -
Pvu1g2686 766 SUPERFAMILY RING/U-box 269 354 - -
Pvu1g2686 766 MobiDBLite consensus disorder prediction 709 734 - -
Pvu1g2686 766 Gene3D - 400 723 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2686 Pvu-Chr1 51554748 51559706 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2686 1 765 U-box Gene Family AT1G24330 63.846 0.0 988
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2686 - - gmx:100804344 1295.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2686 1 51554748 51559706 Pvu1g2686 1 51554748 51559706 ECH
Pvu1g2686 1 51554748 51559706 Pvu2g1801 2 32534123 32538811 PCT