Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2662 ATGTGGCAAAATCAGCCCAATCATTCTTCTTACACTGATTCTTTCAAGGCTCTTGAAGATCATATACAACATGCTAATTCCTTGGCATCGTCACTTCCTGGAGATTGTGACGGGAACTATTTTCAGATGAAATTATCTTACAGCCCCTTTGCACCTCTTTTCTTGCACTTCATTCAATGGTTGGATCTTAGTTGTACTGATACTTTGCCTCTGTATTTGGGATTACTCCACATACTTATTTTCAATGTAAACGCTGATGGAACACTGTCAATTTCCTCAAATCAAAGGAAAGCAACTACAAAGGAATTTTATGCTGTTATATACCCTTCATTAAGGTTGATTCAAGGCGAGTTTAACAATGATCGAAGAAACAGTTATGCAGAAGTGAACAACAGAAAGAGGCTTGAAAAGGTTCTGAATGAAAATGTAAAGGGAGATGATGAATGTGGCATATGCATGGAAAACAACATGAAAATGGTTCTGCCTAATTGTGGACATTCCTTCTGCATTAGCTGCTTCCATAATTGGTATATGAGATCAGAGTCATGCCCATATTGCCGTGGAAGCATGGGGAGTATCACTCCAACAGATTTATGGGTGGTCATTGGCAACAGTGATCTTGTTGACAGGTTCACCTTTGCAAGAGACAATCTCAGACAGTTGTACCTTTTCATTCAAACTCTGCCTCCAATCTCACCATAA 702 0.3917 MWQNQPNHSSYTDSFKALEDHIQHANSLASSLPGDCDGNYFQMKLSYSPFAPLFLHFIQWLDLSCTDTLPLYLGLLHILIFNVNADGTLSISSNQRKATTKEFYAVIYPSLRLIQGEFNNDRRNSYAEVNNRKRLEKVLNENVKGDDECGICMENNMKMVLPNCGHSFCISCFHNWYMRSESCPYCRGSMGSITPTDLWVVIGNSDLVDRFTFARDNLRQLYLFIQTLPPISP* 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2662 233 ProSiteProfiles Zinc finger RING-type profile. 149 187 IPR001841 -
Pvu1g2662 233 PANTHER RING FINGER PROTEIN 41, 151 3 232 - -
Pvu1g2662 233 PANTHER RING-H2 FINGER PROTEIN ATL47-LIKE 3 232 - -
Pvu1g2662 233 SMART ring_2 149 186 IPR001841 -
Pvu1g2662 233 Pfam Zinc finger, C3HC4 type (RING finger) 146 190 - -
Pvu1g2662 233 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 118 196 IPR013083 -
Pvu1g2662 233 SUPERFAMILY RING/U-box 137 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2662 Pvu-Chr1 51383049 51385926 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2662 148 196 C3H Transcription Factor Family AT1G53820 33.962 1.84e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2662 - - gmx:100805014 370.933
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2662 1 51383049 51385926 Pvu1g2662 1 51383049 51385926 ECH