Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2652 ATGAGGCACGGTTTTCCGGTTTGTTCCCTATATATAATGCAAAATGTCCTTACATTTCCTCACAAGCACACTATTCCTTTATCCTCCTTTCTGTTCAGTACTATTACTCCTATAGAGTTTTTGATTCTGATTGCAGATCAAGCAGTTATGGAAATTCCAATTCCACTGTCATTTATGCTACTCTTTCTACTGCTTCTACCTTCCTGCATTTGTTCTTCCCCACTTCAAGATCCTGAACTAGTGGTCGAAGATGTACAAAAGAGCATTAATGCCTCAAGGAGGAACTTAGCATTTCTGTCTTGTGGAACGGGGAACCCCATTGATGATTGTTGGAGATGTGATGCCAATTGGGAGAAGAATCGAAAGAATTTAGCAGAGTGTTCAATTGGGTTTGGTAAGCATGCAATTGGAGGGAGGGATGGGAAAATATATGTGGTGAGTGACCCTGGTGATCACCCTGTGAATCCCAAGCCAGGAACACTTAGATATGGTGTGATCCAAGAGGAACCACTGTGGATCATTTTCAAGCGTGACATGGTGATTCGTTTGAAGCAAGAGCTTATGATGAACTCATTCAAGACCATTGATGGAAGAGGGGCAAGTGTGCACATTGCTGGTGGCCCTTGCATTACTATACAGTATGTGACCAACATTATCATTCATGGGATTAACATCCATGACTGCAAACAAGGAGGGAATGCCTATGTGAGAGACTCTCCCACCCACTATGGGTGGAGGACTCTCTCAGATGGTGATGGCATCTCCATCTTTGGTGGCAGTCATGTTTGGGTGGATCACTGTTCTCTCTCCAATTGCCGTGATGGCCTCATTGATGCCATCCATGGATCCACTGCCATTACCATCTCCAACAATTACATGACCCACCATAACAAGGTCATGCTTTTGGGCCACAGTGATACTTTCACTAGGGACAAGAACATGCAAGTCACCATTGCCTTTAACCATTTTGGAGAAGGACTAGTACAGAGAATGCCAAGATGTAGGTATGGATACTTCCATGTGGTGAACAATGATTACACCCACTGGAAAATGTATGCCATAGGGGGAAGTGCTGCTCCAACCATCAATAGCCAAGGGAATAGATTTCTTGCTCCCAATGACCATACCTTCAAAGAGGTGACAAAGAGGGAGAATTCAGCACAGAGCAAATGGAAGAACTGGAATTGGAGGTCAACGGGAGATTTGATGTTAAACGGTGCATTCTTCACTGCATCAGGAGCAGGTGCATCTTCAAGCTATGCAAGAGCATCAAGTTTGGCAGCAAAACCATCTTCACTTGTCAGTTCCATAACAGCATCAGCAGGATCACTTGCATGTAGAAAGGGTTCACGTTGCTGA 1359 0.4422 MRHGFPVCSLYIMQNVLTFPHKHTIPLSSFLFSTITPIEFLILIADQAVMEIPIPLSFMLLFLLLLPSCICSSPLQDPELVVEDVQKSINASRRNLAFLSCGTGNPIDDCWRCDANWEKNRKNLAECSIGFGKHAIGGRDGKIYVVSDPGDHPVNPKPGTLRYGVIQEEPLWIIFKRDMVIRLKQELMMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGINIHDCKQGGNAYVRDSPTHYGWRTLSDGDGISIFGGSHVWVDHCSLSNCRDGLIDAIHGSTAITISNNYMTHHNKVMLLGHSDTFTRDKNMQVTIAFNHFGEGLVQRMPRCRYGYFHVVNNDYTHWKMYAIGGSAAPTINSQGNRFLAPNDHTFKEVTKRENSAQSKWKNWNWRSTGDLMLNGAFFTASGAGASSSYARASSLAAKPSSLVSSITASAGSLACRKGSRC* 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2652 452 PANTHER PECTATE LYASE 56 449 - -
Pvu1g2652 452 Gene3D - 104 445 IPR012334 -
Pvu1g2652 452 Pfam Pectate lyase 186 369 IPR002022 -
Pvu1g2652 452 SMART amb_all 178 375 IPR002022 -
Pvu1g2652 452 PRINTS Pollen allergen Amb family signature 127 144 IPR018082 -
Pvu1g2652 452 PRINTS Pollen allergen Amb family signature 150 175 IPR018082 -
Pvu1g2652 452 PRINTS Pollen allergen Amb family signature 186 202 IPR018082 -
Pvu1g2652 452 PRINTS Pollen allergen Amb family signature 250 271 IPR018082 -
Pvu1g2652 452 PRINTS Pollen allergen Amb family signature 330 349 IPR018082 -
Pvu1g2652 452 PRINTS Pollen allergen Amb family signature 352 371 IPR018082 -
Pvu1g2652 452 PRINTS Pollen allergen Amb family signature 394 418 IPR018082 -
Pvu1g2652 452 PRINTS Pollen allergen Amb family signature 423 446 IPR018082 -
Pvu1g2652 452 SUPERFAMILY Pectin lyase-like 89 446 IPR011050 -
Pvu1g2652 452 PANTHER PECTATE LYASE 18-RELATED 56 449 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2652 Pvu-Chr1 51315890 51318232 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2652 56 452 Polysaccharide Lyase AT5G63180 76.980 0.0 640
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2652 K01728 - gmx:100816256 763.451
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2652 1 51315890 51318232 Pvu1g2652 1 51315890 51318232 ECH
Pvu1g2652 1 51315890 51318232 Pvu3g2140 3 42186228 42188285 ECH
Pvu1g2652 1 51315890 51318232 Pvu9g1761 9 24925196 24927951 ECH