Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2651 ATGCCATTTTCATTCACATTCATCTTCCACCTTTTGCTTCTGTCCCCATCTGTGATTTATGTTTCTGCTTCTCCTGTTCAAGATCCTGAATTGGTGGTCCAGGAAGTGGAAAAGAGCATTAATGGGTCGAGGAGAAACTTGGGGTATCTTTCTTGTGGGACGGGGAACCCCATTGATGACTGTTGGAGGTGCGACCCCAACTGGGAAAGGAACCGCAAGCGTCTAGCTAGTTGTGCTATTGGGTTCGGCAAGAATGCCATTGGTGGAAAAGACGGCAAACTATATGTGGTGATTGACTCTAGCGATAATCCTATAAACCCTAAACCAGGTACACTGAGACATGCTGTTATCCAAGAAGAGCCTTTGTGGATCATTTTCAAGCATGACATGGTGATCAAGCTCCACATGGATCTCCTTGTTAATTCTTACAAAACCATTGATGGAAGAGGAGCAACCGTCCACATTGCAGGAGGGCCTTGCATCAAAGTGCACAAGAAGAGGAATATCATAATTCATGGAATACACATTCATGATTGCAAACGAGGTGGCAGTGGATATGTGACTGATTTTCCTAACCATCGCAGTTGGAGTGCAGGATCAGACGGTGATGGGATCACTATCTTTGGTGGGAGCCATGTTTGGGTGGACCATTGCTCCTTGTCAAACTGCTTTGATGGCCTCATTGATGTTGTTCATGGGTCAACGGCCATCACCATTTCCAACAATTATATGACACACCATAACAAAGTCATGCTCTTGGGCCACAGTGATTCCTACAAAGATGACAAGAACATGCAAGTCACCATAGCCTTCAACCATTTTGGTGAAGGGCTTGGAGGGAGAATGCCTAGGTGCAGGTTTGGATACTTTCATGTGGTGAACAACGATTACACACATTGGCAGCATTACGCAATAGGTGGGAGTTCTTCCCCAACTATTTTCAGCCAAGGCAATAGATTTCTTGCTCCAAATAATGAAGACCATAAAGAGGTGACGAAACATTTTAAATCATCAAAAGGAGAGTGGAGGAAATGGAATTGGAGGTCTGAAGGAGATCTGATGTTGAATGGTGCCTTCTTCACAGCGTCTGGGGCAGGAGCAACAGCTAGATATGATAGGGCGTCAAGCATGGCAGCAAGACCACCGCTGCTTGTGGCTTCAATCACGGCGGGGGCTGGTGCGCTTAGATGCAAAAATGGCCACCTATGCGGCTAG 1215 0.4609 MPFSFTFIFHLLLLSPSVIYVSASPVQDPELVVQEVEKSINGSRRNLGYLSCGTGNPIDDCWRCDPNWERNRKRLASCAIGFGKNAIGGKDGKLYVVIDSSDNPINPKPGTLRHAVIQEEPLWIIFKHDMVIKLHMDLLVNSYKTIDGRGATVHIAGGPCIKVHKKRNIIIHGIHIHDCKRGGSGYVTDFPNHRSWSAGSDGDGITIFGGSHVWVDHCSLSNCFDGLIDVVHGSTAITISNNYMTHHNKVMLLGHSDSYKDDKNMQVTIAFNHFGEGLGGRMPRCRFGYFHVVNNDYTHWQHYAIGGSSSPTIFSQGNRFLAPNNEDHKEVTKHFKSSKGEWRKWNWRSEGDLMLNGAFFTASGAGATARYDRASSMAARPPLLVASITAGAGALRCKNGHLCG* 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2651 404 Pfam Pectate lyase 140 320 IPR002022 -
Pvu1g2651 404 PANTHER PECTATE LYASE 18-RELATED 3 400 IPR045032 GO:0030570
Pvu1g2651 404 Gene3D - 55 396 IPR012334 -
Pvu1g2651 404 SUPERFAMILY Pectin lyase-like 40 397 IPR011050 -
Pvu1g2651 404 SMART amb_all 129 326 IPR002022 -
Pvu1g2651 404 PANTHER PECTATE LYASE 3 400 - -
Pvu1g2651 404 PRINTS Pollen allergen Amb family signature 78 95 IPR018082 -
Pvu1g2651 404 PRINTS Pollen allergen Amb family signature 101 126 IPR018082 -
Pvu1g2651 404 PRINTS Pollen allergen Amb family signature 137 153 IPR018082 -
Pvu1g2651 404 PRINTS Pollen allergen Amb family signature 201 222 IPR018082 -
Pvu1g2651 404 PRINTS Pollen allergen Amb family signature 281 300 IPR018082 -
Pvu1g2651 404 PRINTS Pollen allergen Amb family signature 303 322 IPR018082 -
Pvu1g2651 404 PRINTS Pollen allergen Amb family signature 345 369 IPR018082 -
Pvu1g2651 404 PRINTS Pollen allergen Amb family signature 374 397 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2651 Pvu-Chr1 51308047 51311170 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2651 3 403 Polysaccharide Lyase AT5G63180 68.227 0.0 564
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2651 K01728 - gmx:100801136 771.155