Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2646 ATGGGAGAAACCGGAATCATTGTCCGGTTGGAGGGAAGCTTGGACCCAAGAGCTGAAGAGTTCAGACCAACCATAAGCAACCCTCTTGTTCAATGCCATTGGTACCCTGTTCCTCTGCCTCTACCCTTACCATTACCCTTACCCTTCCCACACCCTGTTCCTCCGCCGCCGCCGCCGCACCTCTCCACCTCCTCCACCCGCTCCCTCCTCCTCACGCCGCTCCCCTTCACCTCCGACTCCGCCCTACGCGCCGAACTCCAGGCCTTCGGCGACGTCAGAGCCCTCCAAACGGAAGCCCTCCGCCACGGAATCCTCATCGTCCACTTCTACGACCTCCGCCATGCAGAGTCCGCCTTCGCCGCCATCCGCTCCATGCACCACCACTTCCCTCAATTCGCCCCCGCCGCCCCCGGCCTCCTCTCCGCCCGCCCCGTCTCCGCCCACTACGTCCTCCCCTCCTCCTCCTCCACCCCAGACGCCCACAACCAAGGCACCCTCGTCGTCTTCAACCTCGACCCCCACCTCTCCACCGACCACCTCCGTCGACTCTTCCACCCTTTTGGTCCCATCAAGGAATTGAGAGATACGCCATGGAAGAAGAACCAAAGATTCGTGGAGTTCTTCGACACCAGAGACGCTGCCAAGGCCTTGAAGCACATGAACGGCAAGCAAATTCACGGGAAACCCATCATCATCGAGTTCAGCAGACCCGGTGGTCACACTCGCAAGTTCTTCCACCACTCTGCTTCATCCAAAGCCACTCCTCTCGATTTCAATGCCCCACCACGCCGTTTTGATGCTCCTCGCCTGCACAGCTCCCACCCTCAATTGGCTCGCAAGAAATCATTGGAGAGTCCCGTCAAGGTTGAAGAATCTGTGGATGAGGCAATTGGGTCAATGAGTTTGACCGGGGATGTTGGAAATGGGGTTGAAGAGCAGCAGCACTCACATGGTGGTGGCCCCCCAAGGAGGAATCTTAGCAGAAAGCAGAATTGCGAGACCACGCTAGTGGTAGCAACCACTAAGCAACAGCAACAACAACCACAGCAACTACCTAGAAGTAGGCACTGGAAGGGAAAGCAAGCAAAGAAACACGAAGCTCGCTTTCTAATAAAAGAGGATGCCATTGTCGAGTCTGGTCCCAAAGATCCTAGAACTACTGTCATGATCAAAAACATTCCCAACAAGTACAGTCAGAAGTTGCTATTAAACATGCTGGATAATCACTGCATACACTGCAACGAGCAGGTTGCAGACGGCGATGAGCAGCCTCTATCCTCCTACGACTTCGTGTACCTCCCCATTGATTTCAACAACAAGTGCAACGTGGGATATGGGTTCGTGAACATGACATCCTCGGAGGCCACACTCAGGCTCTACAAGGCCTTCCACCTTCAGCATTGGGAGGTTTTCAACTCAAGAAAAATCTGTGAAGTCACCTATGCAAGAGTTCAGGGTTTGGAGGCATTGAAGGAGCACTTTAAGAACTCAAAGTTCCCATGCGAGATGGAGCATTACCTGCCAGTGGTGTTTTCACCACCTCGAGATGGGAGGGAACTCACTGAGCCACTTCCATTAGTGGGGAACAGCAGCAGCAACAAACAGCAGCAGCACCAACCACCCATTTCAATTCCAAGCTGCTGCGATGATAATGGCGGTGATGACGTGTCGAGCAGCAAAAGCGGCGGCGTGTGTGATGATGATGACACGAATGGTGCAGAAGTGGGTGGTGGAGGAAGCCTAGTAAATTGA 1752 0.5439 MGETGIIVRLEGSLDPRAEEFRPTISNPLVQCHWYPVPLPLPLPLPLPFPHPVPPPPPPHLSTSSTRSLLLTPLPFTSDSALRAELQAFGDVRALQTEALRHGILIVHFYDLRHAESAFAAIRSMHHHFPQFAPAAPGLLSARPVSAHYVLPSSSSTPDAHNQGTLVVFNLDPHLSTDHLRRLFHPFGPIKELRDTPWKKNQRFVEFFDTRDAAKALKHMNGKQIHGKPIIIEFSRPGGHTRKFFHHSASSKATPLDFNAPPRRFDAPRLHSSHPQLARKKSLESPVKVEESVDEAIGSMSLTGDVGNGVEEQQHSHGGGPPRRNLSRKQNCETTLVVATTKQQQQQPQQLPRSRHWKGKQAKKHEARFLIKEDAIVESGPKDPRTTVMIKNIPNKYSQKLLLNMLDNHCIHCNEQVADGDEQPLSSYDFVYLPIDFNNKCNVGYGFVNMTSSEATLRLYKAFHLQHWEVFNSRKICEVTYARVQGLEALKEHFKNSKFPCEMEHYLPVVFSPPRDGRELTEPLPLVGNSSSNKQQQHQPPISIPSCCDDNGGDDVSSSKSGGVCDDDDTNGAEVGGGGSLVN* 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2646 583 MobiDBLite consensus disorder prediction 518 583 - -
Pvu1g2646 583 Pfam RNA recognition motif 2 385 495 IPR007201 -
Pvu1g2646 583 SMART rrm1_1 165 233 IPR000504 GO:0003723
Pvu1g2646 583 Gene3D - 157 244 IPR012677 -
Pvu1g2646 583 MobiDBLite consensus disorder prediction 301 328 - -
Pvu1g2646 583 PANTHER RNA BINDING PROTEIN 34 548 - -
Pvu1g2646 583 MobiDBLite consensus disorder prediction 340 359 - -
Pvu1g2646 583 MobiDBLite consensus disorder prediction 340 354 - -
Pvu1g2646 583 MobiDBLite consensus disorder prediction 525 544 - -
Pvu1g2646 583 CDD RRM3_EAR1_like 385 486 IPR034458 -
Pvu1g2646 583 SUPERFAMILY RNA-binding domain, RBD 165 463 IPR035979 GO:0003676
Pvu1g2646 583 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 166 230 IPR000504 GO:0003723
Pvu1g2646 583 Gene3D - 327 491 IPR012677 -
Pvu1g2646 583 MobiDBLite consensus disorder prediction 247 287 - -
Pvu1g2646 583 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 164 237 IPR000504 GO:0003723
Pvu1g2646 583 PANTHER TERMINAL EAR1-LIKE 1 34 548 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2646 Pvu-Chr1 51272918 51275950 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2646 166 236 Eukaryotic Initiation Factors Gene Family AT2G23350 37.333 2.27e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2646 - - vra:106755897 953.355
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2646 1 51272918 51275950 Pvu1g2646 1 51272918 51275950 ECH