Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2645 ATGGGTAGCAAAGGTGGATTCTTTCGTTATGCAGATGGAGTGGACAAATTTCTGTTACTCTTTGGGACATTGGGTTGCATTGGGGGTGGCCTACAAACCCCTATGACAATGCTTGTTCTTGGCAGTTTGATAGATGATTATGAAGGTGGATCTGAACATTCTGTGTCCAACCATGTTATAGACAAGTACGCTCTAAGGCTGCTTGGTGTTGCAATTGGGGTTGCTTTATCCTCCTTTATAGAAGGGGTGTGTTGGACAAGAACTGCAGAGAGACAAACTTCCCGCATGAGAATTGAGTATCTTAAATCAGTCCTAAGGCAAGAGGTTGGTTTCTTCGACAAGCAAACTGATTCCACAACTTTCCAAGTTATTGCCACCATAACTTCTGATGCTCAAACAATCCAAGATACCATAGCTGATAAGGTGCCCAATTGTCTGGGTCACCTCTCAGCCTTTTTCTCTAGCTTCATAGTGGCACTCTTCCTTTCATGGAGACTTGCAGTGGCTGCTTTTCCATTTTCAATCATGATGATCATGCCGGCAATCATATTTGGGAAGGCCATGAAAGAGCTGGGAAATAAAATGAAGGATGCATATGGAGTTGCTGGCAGCATAGCTGAACAAGCAATCTCATCAATACGCACTGTTTATTCATATGTGGGTGAGAAGCAAACAATAAAAGCTTTCAACTTGGGTCTTGAAAAAAGTATGGAGATTGGCATAAAACAAGGTCAAATCAAGGGAGTGATAATCGGTAGCATTGGGTTGCTATATGCTACTTGGGCATTCCAATCCTGGGTTGGTAGTGTTCTTGTCAGGACAAAAGGAGAAAGTGGTGGCCCTGTGTTTTGTGCTGAAATATGCATCATTTGGGGAGGACTGTCTCTGATGAGTGCACTCCCAAATCTTGGTTTCATATTAGAGGCAACAATAGCTTCTACCCGAATTTTTGAGATGATTGATCGAGTGCCAAGCATAAATTCTTATATAGAAAAAGGAAAGGTCTTAACTCATGCAAGAGGAGAAATCACATTTCAAGATGTTGAGTTTAGTTACCCATCAAGGCCAGATGCACTGATTCTCCAAGGACTCAATCTGAAAGTGCAGGCTGGTAAAACACTGGGTCTAGTTGGAGGGAGTGGTTCTGGGAAATCTACTATAATCTCTTTGCTTGAAAGATTTTATGATCCTGTTTATGGTGAGATATTGCTTGATGGATATGATATACAGACACTGCATCCTAAGTGGTTAAGGTCCCAGATGGGACTGGTAAATCAGGAGCCAATTCTCTTTGCAACATCCATAAGGGAGAACATTCTATTTGGCAAGGAAGGAGCTTCAATGGATGGAGTTATAAGCGCAGCAAAGGCAGCAAATGCACATGATTTCATTGTCAAACTTCCTAATGGATATGAAACTCAAGTGGGACAATTCGGTGCTCAGTTGTCTGGAGGGCAAAAGCAGAGGATTGCCATTGCAAGGGCTTTAATAAGAGAACCCAAAATCCTACTACTTGATGAAGCCACAAGTGCTTTGGATTCACAGTCCGAAAGACTAGTTCAGGAGGCCCTTGATAAGGCTTCTAGAGGAAGGACAACAATCATCATAGCACATCGCCTTTCAACAATTCGCAATGCTGATTCAATAGTAGTTCTTCAATCAGGAAGAGTCCTTGAATGTGGTTCCCATGATGAATTACTCCAACTGAACAATGGACAAGGAGGGGCTTACAGAAAAATGCTACAGCTTCAACAAGCAACAAGTCAAAACGAAATTGCATTGCATCCAATAAACAAGAGTCCCTTAGCTATGGAAAATCTTACTGTGGGTTGGAACCAGCACTCTACCGGTACACATAGAAGCCAAAATTCGAGATGGCAAAGTAGCCCAACTCATCATGCATTTAGCTCAACACAGCCATTTAGTCCCATATATTCAATCAGTGTTGTAGACTCTAGCTTTGATGACTACAACATGGAAAACTTTGAGAAATCTTCTCATACAAACTTCTCCCAATGGCATTTACTAAGAATGAATTCCCCTGAGTGGAGACATGCTTTGCTTGGGTGTTTAGGGGCCATTGGCTCTGGAATATGCCAACCAATTTACTCCTATTGCTTGGGAATAGTTGCATCTGTCTACTTCATAAAAGATGACTCTCGCATCAAATCAGAAATCAGGTTGTACTCCTCCATCTTCTGCTGCATAGCTGTTGTCTACTTCATTTCAGGCCTCCTTCAGCATTACAATTTTACCATTATGGGGGAGAGTTTGCTAAAAAGGGTGCGAGAAAATTTGCTAGAGAAGGTGTTAACTTTTGAGATGGGATGGTTTGACCAAGAGGAGAATGGCAGTGCAGCAATTTGTGCTCGTTTGGCAACTGAAGCCAACTTGGTTAGATCCCTTGTTGCAGAACGAATGTCATTGTTAGTTAATGTTTCTGTTATGGCTTTATTGGCTTTTGTTCTTAGTTTAATTGTCACATGGAGGGTGGCTCTTGTCATGATTGCAATGCAGCCTTTGATCATTGCATGTTTCTACTCAAAAAACATTCTCATGAAAAATATGGCAGGAAAAGCAAGAAGGGCTCAGAGAGAAGGTAGTCAATTGGCAATGGAAGCTACTGTTAACCACAGGACTATTGCTGCATTTTCATCTGAGAAAAGGATTTTGAACTTGTTCAGAACTTCTATGGAAGGCCCTAAGAAGGAAAGCATCAAGCAATCATGGATTTCAGGTTCCATTTTGTCAGTCTCATATTTTGTAACAACAGCATCTATAACTTTGACTTTTTGGTATGGAGGCCGGTTATTGAATAAAGGGCTGGTGGAATCTAAACATCTTTTGCAAGTTTTCCTCATTTTGATGGGCACTGGTAGGCAAATTGCAGAGACAGCAAGTGCAACTTCTGACATAGCTAAAAGTGGAAGAGCCATTAGTTCAGTATTTGCAATACTTGATAGGAAAAGTGAGATTGAACCAGAAGATCCTAGGCATAGAAAGTGTAAAAATACTTTGAAGGGCCATATAAAACTTAGAGATGTTTTTTTCTCATACCCAACAAGGCCAGAGCAAATGATTCTCAAGGGCCTCAATCTTGATATTGAAGCTGGCAAAACAGTTGCATTAGTGGGACAAAGTGGCTCGGGTAAATCCACCATCATTGGCTTAATCGAAAGATTTTATGACCCCATGAAGGGATCCATATCCATAGACAATTGTGACATAAGGGAATTTAACTTGAGAAGTTTGAGAACACATATTGCCTTGGTTAGTCAGGAGCCAACTCTCTTTGCAGGAACTATACGTGACAACATTGTGTATGGGAAAAAGGATGCATCAGAAGATGAAATAAGAAAGGCCACACGTCTTTCAAATGCTCATGAGTTTATAAGTTCAATGAAAGATGGATATGATACTTACTGTGGAGAAAGAGGAGTGCAGCTATCAGGAGGGCAGAAGCAGAGGATAGCAATTGCTCGAGCAGTACTAAAGAATCCTTCAATCCTTCTGTTAGACGAGGCAACAAGTGCTCTAGACGGTCTGTCAGAAAATCTGGTGCAGGAGGCATTGGAGAAAATGATGGTTGGAAGAACATGTGTGGTTATAGCTCACCGTTTGTCAACAATACAAAGTGTTGACTCCATAGTTGTGATTAAAAATGGGAAGGTGGTGGAACAAGGGTCGCACTCAGAGCTATTGAGAATTGGATCAAATGGGGCCTATTACTCCTTGACTAGGCTACAACAAGACCTCTCAACATGA 3765 0.4143 MGSKGGFFRYADGVDKFLLLFGTLGCIGGGLQTPMTMLVLGSLIDDYEGGSEHSVSNHVIDKYALRLLGVAIGVALSSFIEGVCWTRTAERQTSRMRIEYLKSVLRQEVGFFDKQTDSTTFQVIATITSDAQTIQDTIADKVPNCLGHLSAFFSSFIVALFLSWRLAVAAFPFSIMMIMPAIIFGKAMKELGNKMKDAYGVAGSIAEQAISSIRTVYSYVGEKQTIKAFNLGLEKSMEIGIKQGQIKGVIIGSIGLLYATWAFQSWVGSVLVRTKGESGGPVFCAEICIIWGGLSLMSALPNLGFILEATIASTRIFEMIDRVPSINSYIEKGKVLTHARGEITFQDVEFSYPSRPDALILQGLNLKVQAGKTLGLVGGSGSGKSTIISLLERFYDPVYGEILLDGYDIQTLHPKWLRSQMGLVNQEPILFATSIRENILFGKEGASMDGVISAAKAANAHDFIVKLPNGYETQVGQFGAQLSGGQKQRIAIARALIREPKILLLDEATSALDSQSERLVQEALDKASRGRTTIIIAHRLSTIRNADSIVVLQSGRVLECGSHDELLQLNNGQGGAYRKMLQLQQATSQNEIALHPINKSPLAMENLTVGWNQHSTGTHRSQNSRWQSSPTHHAFSSTQPFSPIYSISVVDSSFDDYNMENFEKSSHTNFSQWHLLRMNSPEWRHALLGCLGAIGSGICQPIYSYCLGIVASVYFIKDDSRIKSEIRLYSSIFCCIAVVYFISGLLQHYNFTIMGESLLKRVRENLLEKVLTFEMGWFDQEENGSAAICARLATEANLVRSLVAERMSLLVNVSVMALLAFVLSLIVTWRVALVMIAMQPLIIACFYSKNILMKNMAGKARRAQREGSQLAMEATVNHRTIAAFSSEKRILNLFRTSMEGPKKESIKQSWISGSILSVSYFVTTASITLTFWYGGRLLNKGLVESKHLLQVFLILMGTGRQIAETASATSDIAKSGRAISSVFAILDRKSEIEPEDPRHRKCKNTLKGHIKLRDVFFSYPTRPEQMILKGLNLDIEAGKTVALVGQSGSGKSTIIGLIERFYDPMKGSISIDNCDIREFNLRSLRTHIALVSQEPTLFAGTIRDNIVYGKKDASEDEIRKATRLSNAHEFISSMKDGYDTYCGERGVQLSGGQKQRIAIARAVLKNPSILLLDEATSALDGLSENLVQEALEKMMVGRTCVVIAHRLSTIQSVDSIVVIKNGKVVEQGSHSELLRIGSNGAYYSLTRLQQDLST* 1255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2645 1254 Gene3D ABC transporter type 1, transmembrane domain 7 593 IPR036640 GO:0005524|GO:0016021
Pvu1g2645 1254 Gene3D ABC transporter type 1, transmembrane domain 656 996 IPR036640 GO:0005524|GO:0016021
Pvu1g2645 1254 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1010 1246 IPR003439 GO:0005524
Pvu1g2645 1254 CDD ABC_6TM_Pgp_ABCB1_D2_like 676 992 - -
Pvu1g2645 1254 CDD ABC_MTABC3_MDL1_MDL2 1010 1249 - -
Pvu1g2645 1254 ProSitePatterns ABC transporters family signature. 482 496 IPR017871 GO:0005524
Pvu1g2645 1254 SMART AAA_5 1037 1223 IPR003593 -
Pvu1g2645 1254 SMART AAA_5 370 556 IPR003593 -
Pvu1g2645 1254 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 335 584 IPR027417 -
Pvu1g2645 1254 CDD ABC_6TM_Pgp_ABCB1_D1_like 19 316 - -
Pvu1g2645 1254 Pfam ABC transporter transmembrane region 20 274 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Pvu1g2645 1254 Pfam ABC transporter transmembrane region 688 954 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Pvu1g2645 1254 CDD ABC_MTABC3_MDL1_MDL2 343 584 - -
Pvu1g2645 1254 SUPERFAMILY ABC transporter transmembrane region 7 324 IPR036640 GO:0005524|GO:0016021
Pvu1g2645 1254 SUPERFAMILY ABC transporter transmembrane region 674 994 IPR036640 GO:0005524|GO:0016021
Pvu1g2645 1254 Pfam ABC transporter 1028 1177 IPR003439 GO:0005524
Pvu1g2645 1254 Pfam ABC transporter 361 510 IPR003439 GO:0005524
Pvu1g2645 1254 PANTHER OS04G0481700 PROTEIN 11 1251 - -
Pvu1g2645 1254 Gene3D - 997 1253 IPR027417 -
Pvu1g2645 1254 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 687 974 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Pvu1g2645 1254 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 11 1251 IPR039421 -
Pvu1g2645 1254 Coils Coil 1172 1192 - -
Pvu1g2645 1254 ProSitePatterns ABC transporters family signature. 1149 1163 IPR017871 GO:0005524
Pvu1g2645 1254 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1003 1249 IPR027417 -
Pvu1g2645 1254 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 20 283 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Pvu1g2645 1254 Gene3D - 333 585 IPR027417 -
Pvu1g2645 1254 MobiDBLite consensus disorder prediction 615 634 - -
Pvu1g2645 1254 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 343 579 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2645 Pvu-Chr1 51261393 51267469 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2645 20 594 Calmodulin-binding Proteins AT2G36910 36.724 1.70e-104 358
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2645 K05658 - gmx:100804664 2158.64