Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2641 ATGTTAGGGGAGGAGGGGAAGGAGAAAGCCACCGGGGGTAGCGGTGTTGCATGGAAAATCTACTCTCGTTCGGTTTCATGGTCTGATAGGTCTCCTCACAGCCGAAAGCCACCCACAAATAGCAAAGCAAGACCACTGTTGCCACCCCTTCAGCCTCTTTCGATCAACAAGCGCAACGTGGAGGAGTGGCCTAGTGCTGGATCTGATGATCTTGGAGTTTGGCCACTTCCTCAGACTCCCAGAGGCTCTGTCAGAGGCAATGATTCAAGTCAACCCACCCAGGATTTTCTGTTCAAGAGGGAGAAATTGGCCTTCTTTGACAAGGAGTGTTCCAGAATTGCTGAGCACATATACTTGGGGAGTGACACAGTGGCCAAGAACCATGAACTCCTCAGGAAAAATGGAATCACTCATGTGCTCAACTGTGTGGGGTTTGTTTGTCCTGAGTATTTCAAAGGTGATTTTGTGTACAGGACACTTTGGCTGCAGGATAGCCCCACGGAGGACATCACATGTATTCTCTATGATGTGTTTGATTACTTTGAGGATGTTCGAGAGCAAGGTGGGCGTGTCCTTGTCCATTGCTGTCAGGGGGTTTCTCGATCAACGACTTTGGTAATTGCTTATATCATGTGGAGGGAGGGGCAGAGCTTTGAAGATGCTTTTCAGTTTGTGAAGATTGCAAGGGCTGTGACCAACCCAAACATGGGTTTTGCCAGTCAACTTTTGCAGTGCCAGAAACGGGTCCATGCTATGCCTGCAAGTCCAAATTCTATTCTCAGGATGTACCGGATGACTCCTCATTCCCCCTATGACCCTCTTCATCTGGTCCCCAAGTTGGTAAACCAGCCAGGTGCACGAGCACTTGACTCTCGTGGGGCCTTCATTGTTCATATTCCTTCTGCTATCTATGTTTGGAATGGGAAACATTGTAGCTCAGTGATGTCATGCTATGCAAGAAGTGCAGCCTTTCAGGTGATCCGTTATGAGAAGGCAAAGGGTCCAATTCTGAGCATCCATGAAGATGAAGAACCACCTGGGTTTTGGATTGCTCTTTCTGGTGATTCTGACAAAGGTGGGGTCATGGAGGAAGAACCAGTGTTGCCCTCTGAAGACATGGGGAGAAAAGTTTGTGCATATGATTTGGATTTTGAGATTTTCCACAAGGCACTTGCTGGTGGGGTTGTTCCACCTTTTTCCTTGTCTGATCCAGGATCGGAAACTTGTCTTCCTGCTAGAGAACATGGTTGGGCAAGACTGAGACGGAAGTTCGCTAGTGGATTACTCACATCCCCCAGATTGGCCAGTGAAGCTGATTCAACCCCATGCAATGATCAATCCAGTGTAATTGTGGAAGCTGAAAACCAACATGCTGCAGATGAGCCTTTGTCACCATCATCTATACATCCCTGTGGATCACCAGATTCCTTTGAATGCTATCCAAATAGCAGCTTAGGTAGGGAAAAAGATAGTCATGAAGCCATGGATTTCTCTGTTCATGGTGTTTCTTCATCATTGCCTTTGTCTCCTCCTGGCACATCAAATCCCTTTCCCTGTTTTATAAGCTGCAGCCCAAAATTCAATTCCAAGTCTCCAACACTTTCACCTTCAAGTTCTGATTACGGCAGCTCATTTACCTTTTCACCTTCCTCCACCAATTGGTCAGACTTGTCCTTTGTGTCTTCTCGGCAGCCATCACCATCTGGCCTTGAATCAGCTGAACCCTTTTATGTTAAAGATACATCTTTCTCAGAAAGTTCCTCTTCACTTCACAAAGAAGTTGTCTCTTCACCCTTGGAGGCATTTTCAGCTCATTACTCATTCGAAGGGGCAAACTCTAATTTGCCCTTAAAAGGTTCTTCCCTTTCCATTGCAGAGCGCAGGGGAAGTCATCCACCACCTCTGATGTTGCTATCCTCAGCCAGTGAGACCTCTCACATCCCCAAGAACCTGGAGGACTGCAACTCATAA 1971 0.4708 MLGEEGKEKATGGSGVAWKIYSRSVSWSDRSPHSRKPPTNSKARPLLPPLQPLSINKRNVEEWPSAGSDDLGVWPLPQTPRGSVRGNDSSQPTQDFLFKREKLAFFDKECSRIAEHIYLGSDTVAKNHELLRKNGITHVLNCVGFVCPEYFKGDFVYRTLWLQDSPTEDITCILYDVFDYFEDVREQGGRVLVHCCQGVSRSTTLVIAYIMWREGQSFEDAFQFVKIARAVTNPNMGFASQLLQCQKRVHAMPASPNSILRMYRMTPHSPYDPLHLVPKLVNQPGARALDSRGAFIVHIPSAIYVWNGKHCSSVMSCYARSAAFQVIRYEKAKGPILSIHEDEEPPGFWIALSGDSDKGGVMEEEPVLPSEDMGRKVCAYDLDFEIFHKALAGGVVPPFSLSDPGSETCLPAREHGWARLRRKFASGLLTSPRLASEADSTPCNDQSSVIVEAENQHAADEPLSPSSIHPCGSPDSFECYPNSSLGREKDSHEAMDFSVHGVSSSLPLSPPGTSNPFPCFISCSPKFNSKSPTLSPSSSDYGSSFTFSPSSTNWSDLSFVSSRQPSPSGLESAEPFYVKDTSFSESSSSLHKEVVSSPLEAFSAHYSFEGANSNLPLKGSSLSIAERRGSHPPPLMLLSSASETSHIPKNLEDCNS* 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2641 656 MobiDBLite consensus disorder prediction 64 92 - -
Pvu1g2641 656 Gene3D Severin 261 358 IPR029006 -
Pvu1g2641 656 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 175 229 IPR000387 GO:0016311|GO:0016791
Pvu1g2641 656 SUPERFAMILY Actin depolymerizing proteins 255 354 - -
Pvu1g2641 656 PANTHER PROTEIN-TYROSINE-PHOSPHATASE MKP1 18 642 - -
Pvu1g2641 656 Pfam Dual specificity phosphatase, catalytic domain 117 247 IPR000340 GO:0008138|GO:0016311
Pvu1g2641 656 PANTHER MKPA PROTEIN 18 642 - -
Pvu1g2641 656 ProSiteProfiles Dual specificity protein phosphatase domain profile. 109 251 IPR020422 GO:0006470|GO:0008138
Pvu1g2641 656 MobiDBLite consensus disorder prediction 25 52 - -
Pvu1g2641 656 ProSitePatterns Tyrosine specific protein phosphatases active site. 193 203 IPR016130 GO:0016311|GO:0016791
Pvu1g2641 656 SMART dsp_5 109 248 IPR020422 GO:0006470|GO:0008138
Pvu1g2641 656 CDD DSP 110 244 - -
Pvu1g2641 656 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 105 251 IPR029021 -
Pvu1g2641 656 Gene3D Protein tyrosine phosphatase superfamily 87 251 IPR029021 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2641 Pvu-Chr1 51235066 51238472 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2641 40 145 Protein tyrosine phosphatase (PTP) family AT3G55270 56.897 1.29e-33 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2641 - - gmx:100775448 1053.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g2665 2 42508833 42510463 Pvu1g2641 1 51235066 51238472 PCT