Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2635 ATGGGTCTGTCGAATTTCCCTAGTGCATCTGAAGGGGTGCTTCCGGTGCTTGTGATAAACACGGTTCTCTCAGTGGGTGTGTTGAAGAGCATGTTCAGATCCATGATGCAAGTTGTTGGTGGCAGTGAAAATGGAGGTTCTAGAAGGAACAGTGAACAGGAGTGTCGTGAAAGTTCGGGAGAAAGGAGGGTGTCGATAACAGAGTACAAGGCATTGTGGAAGAAGACAATGGTGGAGTGCTGCGTTTGTTTGTGTCGTTTTGAAGGCAACGAAGAGGTTAGCGAGTTGCCTTGCAAACATTACTTCCACAGAGGTTGTTTGGAAAAATGGTTCGATAACAAACACGTCACATGCCCCTTGTGTCGTTCCATGGATTAG 378 0.4683 MGLSNFPSASEGVLPVLVINTVLSVGVLKSMFRSMMQVVGGSENGGSRRNSEQECRESSGERRVSITEYKALWKKTMVECCVCLCRFEGNEEVSELPCKHYFHRGCLEKWFDNKHVTCPLCRSMD* 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2635 125 SUPERFAMILY RING/U-box 79 123 - -
Pvu1g2635 125 SMART ring_2 80 121 IPR001841 -
Pvu1g2635 125 SMART ringv_2 79 122 IPR011016 GO:0008270
Pvu1g2635 125 Pfam Ring finger domain 79 122 IPR001841 -
Pvu1g2635 125 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 41 125 IPR013083 -
Pvu1g2635 125 PANTHER F21J9.24-RELATED 1 124 - -
Pvu1g2635 125 ProSiteProfiles Zinc finger RING-type profile. 80 122 IPR001841 -
Pvu1g2635 125 PANTHER - 1 124 IPR044249 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2635 Pvu-Chr1 51192545 51193604 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2635 1 123 C3H Transcription Factor Family AT2G04240 33.562 2.59e-23 87.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2635 K16285 - gmx:100811790 185.267