LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pvu1g2629	ATGGAGGTGTCCCTGCACCATCTCCTCATTCTGCTGCTCTCTCTCGGCCATTCCTTAGTCTGCGCCAAATTTCACTGGAGTCCAACATACCCTGCAACCTACGAGGAGATGAGCCGCAGTGACAACGTGAAGGCCTCACTCAGCCTCTCCTTCTCCTGTCTCTTCATCTTCTTCCTCTTGTTCCTTTTCCATAAACTCCGGGAGCGTTTTTGCCCCCTCCCGACAACAATCACCGAAGCGATCAAAAGCTGTCCCACCTTCGATTTCTCCGAGATGAAGGAACTGAGCGTGGGGAACGGGGCAGAGGAGTGCGCGGTGTGCTTGGTGGAGTTCCAAGACTCCCACACCGTGAAGATGCTGCCGCTGTGCCAACACGTTTTCCACCAGCACTGCATCGATCAATGGCTAGCCTCTCGCCTCACGTGTCCCATTTGTCGCCAGAACCTCATAACACATCATACTCAACTCAACATCACCGAAGTCCCATCACCAGAACAAGAACAACAAGAACAAGAAGAAGAAGAAGAAGAAGGTGGTGAAGATGAAAGTGAGGTGGCAAGGGAACAGGTTTAA	573	0.5201	MEVSLHHLLILLLSLGHSLVCAKFHWSPTYPATYEEMSRSDNVKASLSLSFSCLFIFFLLFLFHKLRERFCPLPTTITEAIKSCPTFDFSEMKELSVGNGAEECAVCLVEFQDSHTVKMLPLCQHVFHQHCIDQWLASRLTCPICRQNLITHHTQLNITEVPSPEQEQQEQEEEEEEGGEDESEVAREQV*	191

Showing 1 to 1 of 1 entries

Annotation information

Show entries

Search:

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pvu1g2629	190	MobiDBLite	consensus disorder prediction	166	183	-	-
	Pvu1g2629	190	PANTHER	E3 UBIQUITIN-PROTEIN LIGASE ATL6	80	181	-	-
	Pvu1g2629	190	PANTHER	RING FINGER DOMAIN-CONTAINING	80	181	-	-
	Pvu1g2629	190	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	76	157	IPR013083	-
	Pvu1g2629	190	ProSiteProfiles	Zinc finger RING-type profile.	104	146	IPR001841	-
	Pvu1g2629	190	SMART	ring_2	104	145	IPR001841	-
	Pvu1g2629	190	Pfam	Ring finger domain	103	146	IPR001841	-
	Pvu1g2629	190	SUPERFAMILY	RING/U-box	103	153	-	-
	Pvu1g2629	190	MobiDBLite	consensus disorder prediction	156	190	-	-

Showing 1 to 9 of 9 entries

Duplication type information

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pvu1g2629	Pvu-Chr1	51164293	51164865	Proximal

Showing 1 to 1 of 1 entries

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pvu1g2629	79	186	Rapid Response to Elicitors	AT2G35000	39.815	9.51e-23	92.0

Showing 1 to 1 of 1 entries

Pathway information

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pvu1g2629	K10664		-	gmx:100804862	141.354

Showing 1 to 1 of 1 entries