Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2629 ATGGAGGTGTCCCTGCACCATCTCCTCATTCTGCTGCTCTCTCTCGGCCATTCCTTAGTCTGCGCCAAATTTCACTGGAGTCCAACATACCCTGCAACCTACGAGGAGATGAGCCGCAGTGACAACGTGAAGGCCTCACTCAGCCTCTCCTTCTCCTGTCTCTTCATCTTCTTCCTCTTGTTCCTTTTCCATAAACTCCGGGAGCGTTTTTGCCCCCTCCCGACAACAATCACCGAAGCGATCAAAAGCTGTCCCACCTTCGATTTCTCCGAGATGAAGGAACTGAGCGTGGGGAACGGGGCAGAGGAGTGCGCGGTGTGCTTGGTGGAGTTCCAAGACTCCCACACCGTGAAGATGCTGCCGCTGTGCCAACACGTTTTCCACCAGCACTGCATCGATCAATGGCTAGCCTCTCGCCTCACGTGTCCCATTTGTCGCCAGAACCTCATAACACATCATACTCAACTCAACATCACCGAAGTCCCATCACCAGAACAAGAACAACAAGAACAAGAAGAAGAAGAAGAAGAAGGTGGTGAAGATGAAAGTGAGGTGGCAAGGGAACAGGTTTAA 573 0.5201 MEVSLHHLLILLLSLGHSLVCAKFHWSPTYPATYEEMSRSDNVKASLSLSFSCLFIFFLLFLFHKLRERFCPLPTTITEAIKSCPTFDFSEMKELSVGNGAEECAVCLVEFQDSHTVKMLPLCQHVFHQHCIDQWLASRLTCPICRQNLITHHTQLNITEVPSPEQEQQEQEEEEEEGGEDESEVAREQV* 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2629 190 MobiDBLite consensus disorder prediction 166 183 - -
Pvu1g2629 190 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL6 80 181 - -
Pvu1g2629 190 PANTHER RING FINGER DOMAIN-CONTAINING 80 181 - -
Pvu1g2629 190 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 76 157 IPR013083 -
Pvu1g2629 190 ProSiteProfiles Zinc finger RING-type profile. 104 146 IPR001841 -
Pvu1g2629 190 SMART ring_2 104 145 IPR001841 -
Pvu1g2629 190 Pfam Ring finger domain 103 146 IPR001841 -
Pvu1g2629 190 SUPERFAMILY RING/U-box 103 153 - -
Pvu1g2629 190 MobiDBLite consensus disorder prediction 156 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2629 Pvu-Chr1 51164293 51164865 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2629 79 186 Rapid Response to Elicitors AT2G35000 39.815 9.51e-23 92.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2629 K10664 - gmx:100804862 141.354