Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2626 ATGACTAGTTTCCATTCTAGAAAACTAGTTTTCCCCTTCCTTTGTTCAAGTGATGGTTCTACCATGAGGAACAGAACCAGTCCTATAGCTTCTCCTCTGCCCTCACCAGTTTCATTTCCATGCTTTTCACCACCCCTCCGTGAAGGACATCACGACCACCTACACTTTCAACCTACCATTATAATTGTCATAAGTGGCTTATCTTGTGTCATTCTGTTTATCATCTTCTTGTCCAAAATCCTAAGGTACTATTACTTCAATAGATACAACATTAGCAGAAGAAACCCTCCAATACTATTTGACATTCGAGGAGATTCTCCCTTTTTTGATGATGAGGAACATGAACAAGTTATGAGGCAGCACCCCTTATGGTTCAGCCCCACAGAGGGTCTCCAACAATCCACCATAGACTCCATCACAGTTTACAGATACAGAAATGATGAAGTGTTGGTTAAAGAAACTGAGTGTCTTGTTTGCCTAGGTGAGTTTCAACAAGAAGAGAGTCTGAGACTGTTGCCAAAGTGTAGCCATGCTTTCCATGTCCCTTGCATTGACACTTGGTTGAGGTCACATAAAACTTGTCCCTTGTGCCGTGCCCCTATTGTTCATGACACTGCCAGTGTTGATGGTGGAACTGAGTCTGATTCAAGTGTTTCTGATATGATTGAGGACATGGAAGAATGTAGTAGTGGTGTAGTGAGGGTTGGTGATGAAGATTCTAGTGAAGAGGAGAGAGGTGATGGAATTGAAGTTTTGTCTGAATGGGGTGAGGTGAGTGATCATTCTTCAATTCTATTTAGTTTTGTTTCGGATGTTGGTACACAACCACAAGAATTTGACCATGAAAATGAATCCAAAATGAAGAGGTCTTTCTCAGTGGATTCATCTTCTGCTATGGAAAAGAAGGCTTCAAATTCAGGTGCAAAAATGATGTTGGTATCACTAAGGAGTTGA 954 0.413 MTSFHSRKLVFPFLCSSDGSTMRNRTSPIASPLPSPVSFPCFSPPLREGHHDHLHFQPTIIIVISGLSCVILFIIFLSKILRYYYFNRYNISRRNPPILFDIRGDSPFFDDEEHEQVMRQHPLWFSPTEGLQQSTIDSITVYRYRNDEVLVKETECLVCLGEFQQEESLRLLPKCSHAFHVPCIDTWLRSHKTCPLCRAPIVHDTASVDGGTESDSSVSDMIEDMEECSSGVVRVGDEDSSEEERGDGIEVLSEWGEVSDHSSILFSFVSDVGTQPQEFDHENESKMKRSFSVDSSSAMEKKASNSGAKMMLVSLRS* 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2626 317 MobiDBLite consensus disorder prediction 276 317 - -
Pvu1g2626 317 Pfam Ring finger domain 155 198 IPR001841 -
Pvu1g2626 317 ProSiteProfiles Zinc finger RING-type profile. 156 198 IPR001841 -
Pvu1g2626 317 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 130 207 IPR013083 -
Pvu1g2626 317 CDD mRING-H2-C3H2C2D_ZSWM2 155 198 - -
Pvu1g2626 317 SUPERFAMILY RING/U-box 143 205 - -
Pvu1g2626 317 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 32 306 IPR044675 -
Pvu1g2626 317 PANTHER RING-H2 FINGER PROTEIN ATL54 32 306 - -
Pvu1g2626 317 SMART ring_2 156 197 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2626 Pvu-Chr1 51146820 51147859 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2626 61 202 C3H Transcription Factor Family AT1G72220 45.517 3.13e-33 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2626 - - pvu:PHAVU_001G254300g 622.468
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g2680 2 42618275 42620028 Pvu1g2626 1 51146820 51147859 PCT