Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2624 ATGAAGAAAACTTCGTACCCTAACCCCACTTATCGTCGCTGTGATGCTCATTCTGACGCACCACCGCATGGCTGTTCCACTCCCCGCCCAATCTTCCACCGTCCCTTCCACCAATCGAGACCACGCTTTTATCCACATCCCGTCCGCCTCCACCGTCCTCCGGAGCCTTATTTCAAGGTGGAGCTCCGCTTCAGCCTTCGCCCTCCTAGCCGCGACGAGGTGGAGGCTCTGATCAAAGAATGTGAGCACGAGCCTCAGTCGTTCGCTTTCTACCCCGGAGACGACGTCGCCGCCGCGCTCAGTTACCGGAACTGGGAGGAGGCGTGTGACGCGGCCGCTTGGTTCTGGGAGTCGCTGCTTTTGGAGAAACACGGTTACACGCCGGCGCTGGACTCCAACGTTGCGGTCACGGGCGATCTCGATGGCCGCCTTCGAGTGTTGTTCACGAGGCACGTTCAGAGGGTGATGGAGGGGAGAGAGGTTAAGCGGTGGGTGGAGGAGAGTGAACGGTTGTCGAAGGAGATTGCGAGGGTTTCAACTTTGCTTCGGAATGGCTTGCATATTGACTTGAGTAGTCACTATATTGAGCAGAAGAAAGGACTCAATGTTGAGAAAAACCAGGTTGAGAGGAGGTTGAAGGAGTTCGAATCTGCGATGGATTGTATACTGAAGTATCTGGCGGAGGGTGATGACGAGGAGGGTGGTGGAAGTGTGAATGTGTTCAAGTTTGATGGATGTTTTGATTGGAATCGCATTCACTGTCTGATCAGAAGGGAGTGTCGAAGACTGGAGGATGGATTGCCCATTTATACTTACCGGACAGATATTCTTCGGGAAATACATTATCAGCAGATAATGGTGTTAATAGGAGAGACTGGTTCTGGAAAGAGTACACAGTTAGTTCAGTTTCTTGCTGATTCTGGCATTGGTGCTGATGAATCCATTGTATGCACCCAACCTCGCAAGATTGCTGCCAGATCAGTGGCTCAAAGGGTCCAGGAAGAAAGCAGTGGATGTTATGAAGGGCAATCAATCAAATGTTCTATGTTTTCATCCTTGCATGAGTTTGATTCCAGGATAATATTCACGACAGATCACTGTTTATTGCAGCACTACATGCGTGATAACAATTTGTCTGGGATCTCATGCATCATAATTGATGAGGCTCACGAGAGGAGCTTAAATACAGATTTACTGATGACTTTGTTGAAGAATTTACTTTATAGAAGGGGTGAGATGCGGCTTATCATTATGTCTGCTACAGCTGATGCAAAGCAGCTATCTGATTTCTTTTATTGTTGTGGAATTTTTCGTGTGACTGGGAGAAGTTTTCCAGTGGATGTCAAATATGTTCCTTCTGACCATGCCGGGCATTCTGGTTCTGTTGGTGTTGCCTCGTATGTTTCTGATGTTGTCAGAAAGGCAACTGAGGTTCATAAAACAGAGAAAGAGGGAACTATCATTGCCTTTTTGACCTCTCAGATAGAAGTGGAATATGCCTGTGAAAAGTTTCAAATACCTTCTGCAGTTGCCCTGCCATTGCATGGAAAACTTTCATCTGAAGAGCAATTTCGTGTTTTTCAAAACTACCCTGGAAAGAGAAAAGTGATATTTTCAACAAATCTTGCGGAGACATCACTGACAATTCCTGGTGTTAAGTATGTGATTGATTCTGGTTTATTTAAAGACTGCAGATATGATCCTGGCAGTGGGATGAATGTACTTAAGGTTTGCTGGATTAGTCAGAGCTCTGCTGATCAAAGGGCTGGTCGTGCTGGGAGGACTGAGCCTGGTGTGTGCTATAGACTGTATTCAGAAACTGATTATCAATCAATGGACCTAAATCAAGAACCAGAGATTCGGCGAGTTCATCTTGGTGTAGCCGTTTTGAGGATCCTAGCTTTAGGAGTGACGAATGTGCAGGATTTTGATTTTGTGGATGCTCCAAGTTCTAGCTCGATTGATATGGCAATCAGGAATCTAATTCAGTTACGAGCAATTGAGAAGAAAAATGATGTTCACAATTTAACGCCGGAGGGTTGGTGCCTGGTAAAAATTGGAATTGAACCCAGGCTGGGTAAACTTATTCTTGGCTGTTTCAAAGATGGTTTGGGCAGGGAAGGTATTGTTCTTGCTGCTGTGATGGCCAACGCCAGTACCATATTTTGCAGAGTTGGCAGTGAATTTGATAAACAAAGATCTGATTGTCTTAAAGTGCAATTTTGCCATTGTGATGGGGACCTCTTTACTCTTCTCTCTGTGTACAAGGAATGGGAAGCTTTGCCTTTGGAAAGGAGGAACAAATGGTGTTGGGAAAACAGCATCAATGCCAAATCTATGAGGAGGTGCCAAGACACAGTTTTGGAGTTAGAAAGTTGCCTGGAACGTGAACACGACCTTGTTACTCCGAGTTGTTGGCGATGGGATCCATGTATGCCCTCTAGTTATGATAAGAATTTGAAGAGGGTTATACTGTCCTCACTTGCCGAGAATGTAGCGATGTACTCTGGCTGCAATCAACTTGGTTATGAAGTGGCACAAACTGGGCAACATGTTCAACTACATCCATCTTGTTCATTGCTTGTTTTTGCTCAGAAACCAAGTTGGGTGGTTTTTGGTGAGCTTCTTTCTGTCTCTAATCAATATTTGGTCTGTGTGAGCACATTTGACTTTCAATCATTATATGACCTTCGCCCTGCTCCCTTGTTTGATGTATCTAAAATGGTGGAGCGGAAGTTGCAAATGAAGACCTTGTGTGGTCTTGGCTGTATTCTTCTCAAGAGATTTTGTGGAAAAGCCAACTGTAATTTGCTTGCACTTATTTCACGTATAAGGAAAGCTTGTATGGATGAACGTATCTACATTGAAGTGAATGTTGACCAGAATGCAATCCACTTATTTGCCACTTCAAATGATATGGATGCAGCCCTTGTGTTGGTTAATGGTGCTCTAGAATATGAGAGAAAGTTGCAACGCGCTGAATGCATGGATAAGTGTTTGTATCATGGGTCTGGTCTTTCTCCACCTATAGCTTTGTTTGGTTCTGGTGCTGAGATCAAACATTTGGAACTTGAGAAACGTTCCTTGAGTATTGATGTGTGTCATGCCGACATAAATGCAATTGATGACAAAGAGCTCTTAATGTTTTTAGAGAAGAATACCTCTGGTAGTATCTGTGCTGTGTACAAATTTTCAGGCAATATGAAAGATGAAGATAAGGATAAGTGGGGCAGGATATTGTTTACGTCCCCTGATTTTGTTGAAAGAGCTACTGAACTAGATGGACATGAGTTTTGTGGCTCCTCCTTGAAAATTTTACCTTCGCAGTTGGGAGGGGATAAAATGTTTTCGTTCCCTGCTGTTAAAGCAAAAGTTTCTTGGCCTCGTAGGTCTAGCAGGGGATTTGCCGTAGTTAAATGTGATATAAAAGATGTCAACCATATATTGAGAGATTTCTACAACCTTGCAATAGGGGGAAGGTATGTTCGATGTGAAGTTGGAAAAAAGAGTATGGACAGTGTTACTATAAATGGGCTTGGCAAAGACCTCTCGGAAGCTGAAATACTGGATGTGCTAAGAACTGCTACAAGTAGAAGGATTTTGGATTTTTTCTTGGTAAGAGGGGATGCTGTTGAAAATCCTCCATGCAGTGCTTTGGAAGAGGCACTCCTAAAAGAAATTTACCCCTCTTTGCCCAAAAGGAACCCTCACATTAGTTCTTGCCGAGTTCAGGTGTTTGTACCTGAGCCTAAGGATGCCTTTATGAGAGCTCTAATCAGTTTCGATGGAAGATTGCATTTAGAAGCAGCAAAAGCTTTGGAGCAGATTGAAGGAAAGGTGTTACCTGGATGTTTATCATGGCAAAAGATAAAGTGCCAGCGGTTGTTTCATAGCTCCTTGATATTTCCTATACCAGTGTTTCGTGTGATTAGGGAACAACTGGATGGAGTACTTGCAAGGTTCAGGAATTTAAAAGGTGTTGAATGCAACCTGGACAGGACAGTTAATGGTTCCCACCGAGTGAAGATAACTGCGAACGCAACAAAGACAGTGGCAGAAGTTAGAAGACCTCTGGAGGAACTATTGAGAGGGAAAACTGTTGAGCATGACAGCCTCACCCCTGCAGTTCTCCAGCTCCTGATGTCCAAGGATGGCTTTAATCTTAAAAACTCATTGCAGCAAGAGACAGGAACCTACATTCTTTTTGACAGGCACAACTTGAATTTACGTGTGTTTGGTTCCCCAAACAAGGTTGCCTTGGCTCATGACAAGTTGATTCAATCCCTCCTTTCTCTCCATGAAGAAAAGCAGTTAAAAATCCATCTGAGAGGAAGGGATTTACCTCCTGATTTAATGAAGCAAATGATTAAGAATTTTGGGCCAGATCTCCGTGGACTGAAAGAAAGGGTACCTGGGGTAGATCTTATGCTCAACATAAATCGCCACGTAATCAGTCTTAATGGTAGGAAGGAGTTGAAACCCAGGGTAGAGGAAATAATTTTTGAGATTGCTCGTTCAAGCCATCATTTGGTTGGGACATTTGATAATGATGGTCCTAATTGCCCGATTTGCTTGTGCGAGGTTGAGGATGCATACCGGCTTGAAGGCTGTGGTCATGTGTTCTGCCGGTTGTGTCTGGTGGAACAATGTGAATCTGCTATTAGAAACCAAGGCACCTTCCCAATATGTTGTACTAACAAGGACTGTGGAGATATCATCCTGCTTACGGATCTGAGATCTCTCTTAGTTGGTGATAAGTTGGAGGATCTTTTCAGGGCTTCTTTGGGAGCTTTTGTGACTACGAGTGGGGGAACTTACAGGTTTTGCCCATCTCCAGACTGCCCCTCAATTTATCGAGTTGCAGATCCTGGAACTGCTGGTGAGCCATTTGTTTGTGGGGCTTGTTATTCAGAGACATGTACCAGGTGCCACTTAGAGTATCATCCATACCTTTCATGCGAGAGATATAAGGAGTTCAAGGAAGATCCGGATTCATCTCTGATACAGTGGTGCAGAGGGAAAGACGAAGTTAAGAGTTGTTTGGCGTGTGGATATGTAATTGAGAAGGTGGATGGGTGCAACCATGTTGAGTGCAAGTGTGGAAAACATGTGTGCTGGGTTTGCTTAGAGTTCTTCAGCGCTAGTGATGAATGCTATAGCCATCTGAGAAATGTTCACAAGACCATCATATAA 5193 0.4412 MKKTSYPNPTYRRCDAHSDAPPHGCSTPRPIFHRPFHQSRPRFYPHPVRLHRPPEPYFKVELRFSLRPPSRDEVEALIKECEHEPQSFAFYPGDDVAAALSYRNWEEACDAAAWFWESLLLEKHGYTPALDSNVAVTGDLDGRLRVLFTRHVQRVMEGREVKRWVEESERLSKEIARVSTLLRNGLHIDLSSHYIEQKKGLNVEKNQVERRLKEFESAMDCILKYLAEGDDEEGGGSVNVFKFDGCFDWNRIHCLIRRECRRLEDGLPIYTYRTDILREIHYQQIMVLIGETGSGKSTQLVQFLADSGIGADESIVCTQPRKIAARSVAQRVQEESSGCYEGQSIKCSMFSSLHEFDSRIIFTTDHCLLQHYMRDNNLSGISCIIIDEAHERSLNTDLLMTLLKNLLYRRGEMRLIIMSATADAKQLSDFFYCCGIFRVTGRSFPVDVKYVPSDHAGHSGSVGVASYVSDVVRKATEVHKTEKEGTIIAFLTSQIEVEYACEKFQIPSAVALPLHGKLSSEEQFRVFQNYPGKRKVIFSTNLAETSLTIPGVKYVIDSGLFKDCRYDPGSGMNVLKVCWISQSSADQRAGRAGRTEPGVCYRLYSETDYQSMDLNQEPEIRRVHLGVAVLRILALGVTNVQDFDFVDAPSSSSIDMAIRNLIQLRAIEKKNDVHNLTPEGWCLVKIGIEPRLGKLILGCFKDGLGREGIVLAAVMANASTIFCRVGSEFDKQRSDCLKVQFCHCDGDLFTLLSVYKEWEALPLERRNKWCWENSINAKSMRRCQDTVLELESCLEREHDLVTPSCWRWDPCMPSSYDKNLKRVILSSLAENVAMYSGCNQLGYEVAQTGQHVQLHPSCSLLVFAQKPSWVVFGELLSVSNQYLVCVSTFDFQSLYDLRPAPLFDVSKMVERKLQMKTLCGLGCILLKRFCGKANCNLLALISRIRKACMDERIYIEVNVDQNAIHLFATSNDMDAALVLVNGALEYERKLQRAECMDKCLYHGSGLSPPIALFGSGAEIKHLELEKRSLSIDVCHADINAIDDKELLMFLEKNTSGSICAVYKFSGNMKDEDKDKWGRILFTSPDFVERATELDGHEFCGSSLKILPSQLGGDKMFSFPAVKAKVSWPRRSSRGFAVVKCDIKDVNHILRDFYNLAIGGRYVRCEVGKKSMDSVTINGLGKDLSEAEILDVLRTATSRRILDFFLVRGDAVENPPCSALEEALLKEIYPSLPKRNPHISSCRVQVFVPEPKDAFMRALISFDGRLHLEAAKALEQIEGKVLPGCLSWQKIKCQRLFHSSLIFPIPVFRVIREQLDGVLARFRNLKGVECNLDRTVNGSHRVKITANATKTVAEVRRPLEELLRGKTVEHDSLTPAVLQLLMSKDGFNLKNSLQQETGTYILFDRHNLNLRVFGSPNKVALAHDKLIQSLLSLHEEKQLKIHLRGRDLPPDLMKQMIKNFGPDLRGLKERVPGVDLMLNINRHVISLNGRKELKPRVEEIIFEIARSSHHLVGTFDNDGPNCPICLCEVEDAYRLEGCGHVFCRLCLVEQCESAIRNQGTFPICCTNKDCGDIILLTDLRSLLVGDKLEDLFRASLGAFVTTSGGTYRFCPSPDCPSIYRVADPGTAGEPFVCGACYSETCTRCHLEYHPYLSCERYKEFKEDPDSSLIQWCRGKDEVKSCLACGYVIEKVDGCNHVECKCGKHVCWVCLEFFSASDECYSHLRNVHKTII* 1731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2624 1730 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 382 391 IPR002464 -
Pvu1g2624 1730 ProSiteProfiles Zinc finger RING-type profile. 1521 1563 IPR001841 -
Pvu1g2624 1730 Gene3D - 255 442 IPR027417 -
Pvu1g2624 1730 Gene3D - 443 615 IPR027417 -
Pvu1g2624 1730 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 267 773 IPR027417 -
Pvu1g2624 1730 Pfam DEAD/DEAH box helicase 277 427 IPR011545 GO:0003676|GO:0005524
Pvu1g2624 1730 ProSitePatterns Zinc finger RING-type signature. 1537 1546 IPR017907 -
Pvu1g2624 1730 PANTHER ATP-DEPENDENT RNA HELICASE DEAH11, CHLOROPLASTIC-RELATED 1552 1646 - -
Pvu1g2624 1730 PANTHER ATP-DEPENDENT RNA HELICASE DEAH11, CHLOROPLASTIC-RELATED 97 1472 - -
Pvu1g2624 1730 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 277 440 IPR014001 -
Pvu1g2624 1730 PANTHER ATP-DEPENDENT RNA HELICASE 1552 1646 - -
Pvu1g2624 1730 PANTHER ATP-DEPENDENT RNA HELICASE 97 1472 - -
Pvu1g2624 1730 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 470 636 IPR001650 -
Pvu1g2624 1730 SUPERFAMILY RING/U-box 1517 1580 - -
Pvu1g2624 1730 SMART helicmild6 498 596 IPR001650 -
Pvu1g2624 1730 Pfam IBR domain, a half RING-finger domain 1598 1653 IPR002867 -
Pvu1g2624 1730 SUPERFAMILY RING/U-box 1675 1723 - -
Pvu1g2624 1730 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 820 895 IPR011709 -
Pvu1g2624 1730 SMART ultradead3 265 449 IPR014001 -
Pvu1g2624 1730 MobiDBLite consensus disorder prediction 1 22 - -
Pvu1g2624 1730 ProSiteProfiles TRIAD supradomain profile. 1517 1725 IPR044066 -
Pvu1g2624 1730 Coils Coil 198 218 - -
Pvu1g2624 1730 Pfam Helicase conserved C-terminal domain 479 595 IPR001650 -
Pvu1g2624 1730 Pfam Helicase associated domain (HA2) 657 751 IPR007502 GO:0004386
Pvu1g2624 1730 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1517 1596 IPR013083 -
Pvu1g2624 1730 SMART ha2_5 656 752 IPR007502 GO:0004386
Pvu1g2624 1730 Gene3D - 1650 1728 - -
Pvu1g2624 1730 SMART ibrneu5 1654 1718 IPR002867 -
Pvu1g2624 1730 SMART ibrneu5 1585 1653 IPR002867 -
Pvu1g2624 1730 Gene3D - 618 661 IPR042035 -
Pvu1g2624 1730 CDD SF2_C_RHA 444 604 - -
Pvu1g2624 1730 SUPERFAMILY RING/U-box 1604 1659 - -
Pvu1g2624 1730 ProSitePatterns Zinc finger C2H2 type domain signature. 1705 1726 IPR013087 -
Pvu1g2624 1730 CDD DEXHc_RHA-like 284 439 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2624 Pvu-Chr1 51135985 51142839 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2624 1533 1708 ARIADNE family AT3G27710 31.285 3.11e-13 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2624 K12818 - gmx:100810008 2962.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2624 1 51135985 51142839 Pvu1g2624 1 51135985 51142839 ECH