Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2623 ATGAAGAGACTTAGCAGCAACAGCTCAGATTCTTCTTCCACTCCCCTCATAACAATCTGTCCAACCCCAGAGGAACAGAGTACGAGAAACTGCCAGCAGCACGTGTATGGTAGGGAGTTCCAATCGATGATGCTCGAGGGACTTGACGAGGAAGGTTGTGTTGAAGAAGTGGGGCATCAATCTGAGAAGAAACGCAGACTGAGTGTAGATCAAGTGAAGGCTTTGGAGAAGAACTTCGAGGTTGAAAACAAGCTTGAACCCGAGAGGAAGGTCAAACTTGCCCAAGAACTTGGGTTGCAACCTAGACAAGTAGCAGTTTGGTTCCAGAACCGTCGTGCAAGGTGGAAAACCAAACAATTGGAGAGAGATTACGGTGTTCTCAAAGCCAATTTCGATGCTCTCAAGCTCAACTACGACACCCTCAATCACGACAACGAAGCCTTACGGAAGCAGATAAAGGAGCTTAAACTGAGGTTGGAAGAAGGGGTTTCCGTGAAGGAGGAGATAATGATGCCTGATTCGGAAGACAAAACGACGATGGAACAGAGCAAGAGCGAACCTAGTTGGGAATCCGAGGAACAGTTGAACTACGAGTGTTTCAACAACAACGATTGTTTCGGAGGCGCTTCGCTGTTCCCAGTGGACTTCAAAGACGGTTCTTCCGACAGCGATTCGAGCGCAATCTTGAACGAGGAGAACAACAAGTGCAGCCCCATAACCGAAGATCTGTTGCTGTCGCCGAAATCTTCCTCAATGAACTGTTTGCAGTTCCAGAAAGCGTATCAGACGCAGTACGTGGTGAAGATGGAGGAGCACAATTTCTTGAGCGCGGACGAGGCCTGCAATTTCTTTTCGGACGAACAGGCTCCAACGTTGCAGTGGTGGAGCTGA 891 0.4871 MKRLSSNSSDSSSTPLITICPTPEEQSTRNCQQHVYGREFQSMMLEGLDEEGCVEEVGHQSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANFDALKLNYDTLNHDNEALRKQIKELKLRLEEGVSVKEEIMMPDSEDKTTMEQSKSEPSWESEEQLNYECFNNNDCFGGASLFPVDFKDGSSDSDSSAILNEENNKCSPITEDLLLSPKSSSMNCLQFQKAYQTQYVVKMEEHNFLSADEACNFFSDEQAPTLQWWS* 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2623 296 ProSiteProfiles 'Homeobox' domain profile. 58 118 IPR001356 GO:0003677
Pvu1g2623 296 Pfam Homeodomain 63 116 IPR001356 GO:0003677
Pvu1g2623 296 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-6-LIKE 1 291 - -
Pvu1g2623 296 CDD homeodomain 63 119 IPR001356 GO:0003677
Pvu1g2623 296 ProSitePatterns 'Homeobox' domain signature. 93 116 IPR017970 GO:0000981|GO:0006355
Pvu1g2623 296 MobiDBLite consensus disorder prediction 1 28 - -
Pvu1g2623 296 SMART HOX_1 61 122 IPR001356 GO:0003677
Pvu1g2623 296 SUPERFAMILY Homeodomain-like 48 120 IPR009057 -
Pvu1g2623 296 PRINTS Lambda-repressor HTH signature 89 98 IPR000047 GO:0003677
Pvu1g2623 296 PRINTS Lambda-repressor HTH signature 98 114 IPR000047 GO:0003677
Pvu1g2623 296 Gene3D - 57 125 - -
Pvu1g2623 296 Pfam Homeobox associated leucine zipper 118 159 IPR003106 GO:0006355|GO:0043565
Pvu1g2623 296 Coils Coil 131 165 - -
Pvu1g2623 296 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 291 IPR045224 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2623 Pvu-Chr1 51124934 51127053 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2623 1 296 Homeobox Transcription Factor Family AT2G22430 47.447 7.20e-70 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pvu1g2623 Homeodomain 2.3e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2623 K09338 - gmx:100777924 395.586
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g2682 2 42653295 42655789 Pvu1g2623 1 51124934 51127053 PCT