Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2608 ATGTCCAACTCCAACCACCCAAACGCAGATCCGACCCTAAAATTTAAGTCCCAGGATCCGAATACAACTGCAAACCCTCAGCTTCCGCTTCAGAACCTCTCCCAGGTTCGGACCAGAATTGATTCTCTACAGCACTTCCTATCTCAATCCATCAACACCAACACTCCCCTCACCACCGATCAAATCAACATGGTCTCCACCCACATCATCTCCTCCATCCACCAAATCATCGTCAACGGCGCCGCCCTCGTAACTTACTCCCAACATTCCTACGCCGCCGTCACACCAGATGCCTCGCCGTATCCGAAGCCGGAACCCTCCGCCGCCTATAAACATAAGCAACTACTCGATTCCAAACTCGAACCTCCCGAGGACGACGATGGTGCGGAAGACGACGTCGTGGATTGCGAAATCGTGGAGCTCGACGCCGTGGAAATCCTCGAGGAGCACATCCACTTCTGCGAGATCTGCGGGAAAGGCTTCCGGCGCGACGCGAATCTCCGCATGCACATGCGCGCGCACGGGGACCAGTTCAAGACGCCGGAGGCACTGGCGAAGCCGTCGGAAACCGGCGCGGCACGGCGCGCGATGCGGTTCTCTTGTCCGTTCGAAGGCTGTAACCGGAACAAGCTCCACCGGCGGTTCCGGCCGCTGAAGTCGGTGGTGTGCTTGAAGAACCACTTCAAGCGGAGCCACTGTCCGAAGATGTACTCGTGCACGCGGTGCCACAGGAAGCACTTTTCGGTGCTCTCGGATTTGAAGAGCCACGCCAAACACTGCGGAGAGTGCAGGTGGAAGTGCACGTGCGGGACCACGTTCTCGAGGAAGGACAAGCTGTTCGGCCACATTGCGCTGTTTGAGGGCCACGCGCCTGCGCTCGCGTGCGACGAAGAGGATAAAGGGAAGCAAGTGGTGAGTGATGACGAAAATCCGAGGTTGACGTCTGAGAGTGGATTTGGATTGGTTAATTGTTTTGGGGATGAGGAGTTGCCGGAAGGGTTTTTTGATGATTTTGGGTCCATTGATGACTACTGTTTAAGGGAAGTGTTAGGGTTTCCTAGTAATTGA 1068 0.5571 MSNSNHPNADPTLKFKSQDPNTTANPQLPLQNLSQVRTRIDSLQHFLSQSINTNTPLTTDQINMVSTHIISSIHQIIVNGAALVTYSQHSYAAVTPDASPYPKPEPSAAYKHKQLLDSKLEPPEDDDGAEDDVVDCEIVELDAVEILEEHIHFCEICGKGFRRDANLRMHMRAHGDQFKTPEALAKPSETGAARRAMRFSCPFEGCNRNKLHRRFRPLKSVVCLKNHFKRSHCPKMYSCTRCHRKHFSVLSDLKSHAKHCGECRWKCTCGTTFSRKDKLFGHIALFEGHAPALACDEEDKGKQVVSDDENPRLTSESGFGLVNCFGDEELPEGFFDDFGSIDDYCLREVLGFPSN* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2608 355 ProSitePatterns Zinc finger C2H2 type domain signature. 154 174 IPR013087 -
Pvu1g2608 355 MobiDBLite consensus disorder prediction 1 31 - -
Pvu1g2608 355 SMART c2h2final6 237 259 IPR013087 -
Pvu1g2608 355 SMART c2h2final6 152 174 IPR013087 -
Pvu1g2608 355 SMART c2h2final6 199 232 IPR013087 -
Pvu1g2608 355 ProSiteProfiles Zinc finger C2H2 type domain profile. 152 179 IPR013087 -
Pvu1g2608 355 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 9 353 IPR044300 GO:0010044|GO:0010447
Pvu1g2608 355 Gene3D Classic Zinc Finger 152 175 - -
Pvu1g2608 355 SUPERFAMILY beta-beta-alpha zinc fingers 148 175 IPR036236 -
Pvu1g2608 355 PANTHER ZINC FINGER PROTEIN STOP1 HOMOLOG 9 353 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2608 Pvu-Chr1 51001391 51002864 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2608 137 297 C2H2 Transcription Factor Family AT1G34370 62.424 4.32e-75 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pvu1g2608 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2608 - - gmx:100796506 528.094