Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2605 ATGTGCGGAATCCTCGCAGTGTTCGGTTGCGTCGACCACTCTCAGGCCAAACGTGCTCGCATCATCGAATTGTCTCGCAGGTTGCGGCATAGAGGTCCTGATTGGAGTGGCCTACATTGCCATGATGATTGTTTCCTTGCTCATCAAAGGCTTGCCATTGTTGACCCTACTTCAGGGGATCAACCTTTGTACAACGAAGACAAGACTGTTATTGTCACCGTAAATGGGGAGATATACAACCACAAGCAATTGAGACAGAAACTGAGTTCTCATAAATTTCGAACTGGTAGTGATTGTGAAGTGATTGCCCATCTTTATGAAGAATATGGCGAGGAATTTGTTAACATGCTGGATGGGATGTTCGCCTTTGTTCTTCTTGATACTCGTGATAAAAGTTTTATTGCTGCTCGTGATGCTATTGGCATTACCCCTCTTTATTTGGGCTGGGGTCATGATGGATCAACATGGTTTGCATCTGAAATGAAAGCTCTGAGTGATGATTGTGAGAGATTCATGTCATTTCCTCCAGGGCATATATATTCCAGCAAACAGGGAGGATTAAGAAGGTGGTACAATCCACACTGGTTTTCAGAGGATATTCCATCAACTCCCTATGATCCAATACTTTTGCGTGAGACCTTCGAGAGGGCTGTGGTTAAGAGAATGATGACTGATGTACCCTTTGGAGTTCTTTTGTCTGGAGGATTGGACTCATCACTTGTTGCTTCTGTGGTCAATCGTTATTTGAAAGAATCTGAGGCGGCTCGTCAATGGGGATCACAGTTGCATACTTTCTGCATTGGTTTAAAGGGCTCTCCGGACTTGAAAGCTGCGAAAGAGGTAGCAGATTATCTTGGTACTCGTCACCACGAACTTTATTTCACGGTTCAGGAAGGTATAGATGCACTTGAAGAAGTCATTTACCATATTGAAACATATGATGTAACGACTATCAGAGCAAGTACTCCAATGTTTCTGATGTCCAGGAAAATTAAAGCCTTGGGAGTGAAAATGGTTCTTTCTGGAGAAGGCTCAGATGAAATATTCGGAGGTTACCTGTATTTTCATAAGGCACCCAACAAGAAAGAGTTTCACGAAGAAACATGTCGAAAAATTAAAGCTCTTCATCTTTATGACTGCCTGAGAGCCAATAAGTCAACTGCAGCATGGGGGGTAGAAGCCCGTGTACCATTCTTGGATAAAGAATTTATCGACGTAGCAATGAGTATAGATCCGGAGTGGAAAATGATAAGGCGTGATCTTGGAAGGATAGAGAAGTGGGTATTACGCAATGCATTTGATGATGAAAAGAATCCATATTTACCAAAGCACATATTGTACAGGCAAAAGGAACAGTTCAGTGACGGGGTTGGCTACAGCTGGATTGATGCCTTGAAGGATCATGCTGATAAACAAGTCCCAGATGCAACGATGCTTGCTGCCAATTTTATTTACCCTGAAAACACTCCTACTACTAAAGAAGGATACCTCTACAGGACAATTTTTGAGAAGTTCTTTCCTAAGAATGCAGCAAGGGCAACAGTTCCAGGGGGTCCTAGTGTGGCATGCAGTACTGCAAAAGCTGTGGAATGGGATGCATCATGGTCCAAAAATCTTGACCCTTCTGGTCGTGCTGCGCTTGGTGTCCATGAAGCTTCATATGAAGATGTAGTGGATACCAAAATTGACCAACCCAAAAATGGATCACTTTAG 1713 0.4314 MCGILAVFGCVDHSQAKRARIIELSRRLRHRGPDWSGLHCHDDCFLAHQRLAIVDPTSGDQPLYNEDKTVIVTVNGEIYNHKQLRQKLSSHKFRTGSDCEVIAHLYEEYGEEFVNMLDGMFAFVLLDTRDKSFIAARDAIGITPLYLGWGHDGSTWFASEMKALSDDCERFMSFPPGHIYSSKQGGLRRWYNPHWFSEDIPSTPYDPILLRETFERAVVKRMMTDVPFGVLLSGGLDSSLVASVVNRYLKESEAARQWGSQLHTFCIGLKGSPDLKAAKEVADYLGTRHHELYFTVQEGIDALEEVIYHIETYDVTTIRASTPMFLMSRKIKALGVKMVLSGEGSDEIFGGYLYFHKAPNKKEFHEETCRKIKALHLYDCLRANKSTAAWGVEARVPFLDKEFIDVAMSIDPEWKMIRRDLGRIEKWVLRNAFDDEKNPYLPKHILYRQKEQFSDGVGYSWIDALKDHADKQVPDATMLAANFIYPENTPTTKEGYLYRTIFEKFFPKNAARATVPGGPSVACSTAKAVEWDASWSKNLDPSGRAALGVHEASYEDVVDTKIDQPKNGSL* 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2605 570 ProSiteProfiles Glutamine amidotransferase type 2 domain profile. 2 185 IPR017932 -
Pvu1g2605 570 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 209 484 - -
Pvu1g2605 570 Pfam Asparagine synthase 210 511 IPR001962 GO:0004066|GO:0006529
Pvu1g2605 570 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 1 194 IPR029055 -
Pvu1g2605 570 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 2 192 IPR029055 -
Pvu1g2605 570 PANTHER ASPARAGINE SYNTHETASE 1 558 - -
Pvu1g2605 570 PIRSF Asn_synthetase_glu-h 1 361 IPR006426 GO:0004066|GO:0006529
Pvu1g2605 570 PIRSF Asn_synthetase_glu-h 355 516 IPR006426 GO:0004066|GO:0006529
Pvu1g2605 570 TIGRFAM asn_synth_AEB: asparagine synthase (glutamine-hydrolyzing) 2 367 IPR006426 GO:0004066|GO:0006529
Pvu1g2605 570 Gene3D HUPs 194 514 IPR014729 -
Pvu1g2605 570 CDD Asn_Synthase_B_C 211 456 IPR001962 GO:0004066|GO:0006529
Pvu1g2605 570 Pfam Glutamine amidotransferase domain 48 165 IPR017932 -
Pvu1g2605 570 PANTHER ASPARAGINE SYNTHETASE [GLUTAMINE-HYDROLYZING] 3 1 558 - -
Pvu1g2605 570 Coils Coil 570 570 - -
Pvu1g2605 570 CDD AsnB 2 192 IPR033738 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2605 Pvu-Chr1 50974271 50978943 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2605 69 164 PRT Gene Family AT2G16570 34.906 9.25e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2605 K01953 - gmx:732660 1115.91