Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2596 ATGACGCAGCAGAATGTGGTAGTGTCTGACACCAAATCTGGAGTTCCCCTAACAGTTTTTCCAACACCTGCACAAAAAAAGCCACCTGCAGCACCAGGAGGGTACATTTCTATTTCAAGGAGGAGGGTTTTGAAGAACCTTGAAATCAATGGAGACCAAAGAATCAATGCATGGGTTGAGTCCATGAGAGCCTCATCTCCAACCCATCTTAAATCCACACCTTCTTTCTCTCAGGAGCAAAACTCTTGGATTCTTCACCATCCGTCGGCATTAGACATGTTTGACCAAATCATTGACGCGTCAAAGGGAAAACAAATTGTCATGTTTCTGGACTATGATGGAACACTCTCCCCAATTGTTGAAGATCCTGACCGTGCCTTCATGTCTCATTCGATGAGAAAAACAGTGAGGAAACTTGCTAGGTGTTTTCCTACTGCCATAGTGACTGGCAGATGCAAAGACAAGGTATACAATTTTGTTCAGTTGGCAGAGCTATACTATGCAGGAAGCCATGGAATGGATATTAAAGGGCCAACAAGAAGCTCCAAATACAACAAAGATGCCAAAGCTGAGGCAATTCTTTTTCAACCTGCCAGCGATTTTCTTCCCATGATAGATGAGGTGTACCAACAGTTGGTTGAGAAGACCAAATCAACTCCTGGAGCCATGGTTGAGAACAACAAGTTCTGCCTCTCTGTTCATTTTCGTTGTGTTGATGAAAAGAAATGGAGTGACCTGGCACGCCAAGTGAAATCAGTTTTAAAGGAGTACCCCAAGCTTCGACTTACCCAAGGAAGAAAGGTGCTAGAGATTCGTCCCACTATTAAATGGGACAAAGGAAAGGCCCTGGAATTTTTATTAGAGTCCCTTGGTTTGGCCAATTGCAGTGACGTCTTTCCTGTTTATATTGGCGATGATCGATCCGATGAAGATGCTTTCAAGAAATTGAGAGACAGAGGACAAGGTTTTGGCATTCTTGTCTCCAAATTTCCAAAAGACACAAGTGCATCTTACTCTTTACAAGAACCAAACGAGGTGATGAACTTTCTTCAACGCTTGGTGGAGTGGAAACATATGTCCCAACGAGCACGTTCCCGGGTGTAA 1104 0.4366 MTQQNVVVSDTKSGVPLTVFPTPAQKKPPAAPGGYISISRRRVLKNLEINGDQRINAWVESMRASSPTHLKSTPSFSQEQNSWILHHPSALDMFDQIIDASKGKQIVMFLDYDGTLSPIVEDPDRAFMSHSMRKTVRKLARCFPTAIVTGRCKDKVYNFVQLAELYYAGSHGMDIKGPTRSSKYNKDAKAEAILFQPASDFLPMIDEVYQQLVEKTKSTPGAMVENNKFCLSVHFRCVDEKKWSDLARQVKSVLKEYPKLRLTQGRKVLEIRPTIKWDKGKALEFLLESLGLANCSDVFPVYIGDDRSDEDAFKKLRDRGQGFGILVSKFPKDTSASYSLQEPNEVMNFLQRLVEWKHMSQRARSRV* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2596 367 Pfam Trehalose-phosphatase 109 343 IPR003337 GO:0003824|GO:0005992
Pvu1g2596 367 Gene3D - 106 199 IPR023214 -
Pvu1g2596 367 Gene3D - 203 366 IPR023214 -
Pvu1g2596 367 TIGRFAM T6PP: trehalose-phosphatase 104 354 IPR003337 GO:0003824|GO:0005992
Pvu1g2596 367 CDD HAD_TPP 107 348 - -
Pvu1g2596 367 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 1 367 IPR044651 GO:0004805|GO:0005992
Pvu1g2596 367 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 1 367 - -
Pvu1g2596 367 SUPERFAMILY HAD-like 107 356 IPR036412 -
Pvu1g2596 367 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 108 319 IPR006379 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2596 Pvu-Chr1 50900756 50903569 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2596 102 353 Trehalose Biosynthesis Gene Families AT1G70290 25.830 8.88e-09 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2596 K01087 - gmx:100794430 687.182
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2596 1 50900756 50903569 Pvu1g2596 1 50900756 50903569 ECH