Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2595 ATGGCAACAGTTATGGATATGTACAAGAACAGTAGCATGATGCTCTCAGATTTCTTAGACCCATGTAATGATCAAGAGCTGATGAAAGCACTTGAACCTTTTATGAAAAGTGATTCATCTACCACTTCCTCAATAACTTACCCTTCACTATCTTTTCCAAGCTTCTCCTTCAGCTATGAGTCCCAAAAGGGTCTAAACCAACCCAGTTCCATCAAACTCAACCAGCTCACCCCATCTCAAACATTCCAGATTCAAGCTCAAATCCAGGTTACACGAGCCCAGTTTCTCAGCCCAAAGCCCGTTCCCATGAAGCAGGTGGGTGGTCGTGTTGTTTCCAAGCCCACAAAGCTTTACCGTGGAGTGAGGCAGAGACACTGGGGCAAGTGGGTGGCGGAGATCAGACTTCCCAAGAACCGCACTCGTCTCTGGCTTGGTACATTCGAAACCGCTGAAGAAGCAGCTTTGGCATACGACAACGCAGCGTTTAAGCTCAGAGGAGAAAACGCGAGGCTCAACTTCCATCATCTACGTCACCATGGAGGAAGTGTGTACGGTGCGTTTGGGACCTACAAGCCTCTCCCCTCTGCAGTGGACGCCAAGCTCCAAGCCATTTGTCAAAGCTTGGCCATCAACACACACAAGGAAGAAGAAACAGCAACAACATCGGAGTTCGAGGATGTTAAGGTCGGGAACCAAACAGCATCCTCGCCCTTGTCGGATGAATATTCTTCTTCTTCATCTTCTTCTTGTGCCGGTTCCTCTTCCCCTGAATCCGATATCACTTTCTTGGATTTCTCGGATTCTTACGAAGCAATGGACAATCTTGGGTTGGACTTGGAGAAGTACCCTTCTGTGGAGATTGATTGGGAAGCTTTATCTGAGTCATGA 888 0.4775 MATVMDMYKNSSMMLSDFLDPCNDQELMKALEPFMKSDSSTTSSITYPSLSFPSFSFSYESQKGLNQPSSIKLNQLTPSQTFQIQAQIQVTRAQFLSPKPVPMKQVGGRVVSKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFETAEEAALAYDNAAFKLRGENARLNFHHLRHHGGSVYGAFGTYKPLPSAVDAKLQAICQSLAINTHKEEETATTSEFEDVKVGNQTASSPLSDEYSSSSSSSCAGSSSPESDITFLDFSDSYEAMDNLGLDLEKYPSVEIDWEALSES* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2595 295 MobiDBLite consensus disorder prediction 215 257 - -
Pvu1g2595 295 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-4 1 291 - -
Pvu1g2595 295 CDD AP2 116 173 IPR001471 GO:0003700|GO:0006355
Pvu1g2595 295 SMART rav1_2 117 180 IPR001471 GO:0003700|GO:0006355
Pvu1g2595 295 Pfam AP2 domain 118 167 IPR001471 GO:0003700|GO:0006355
Pvu1g2595 295 PRINTS Ethylene responsive element binding protein signature 118 129 IPR001471 GO:0003700|GO:0006355
Pvu1g2595 295 PRINTS Ethylene responsive element binding protein signature 140 156 IPR001471 GO:0003700|GO:0006355
Pvu1g2595 295 Gene3D AP2/ERF domain 117 175 IPR036955 GO:0003700|GO:0006355
Pvu1g2595 295 SUPERFAMILY DNA-binding domain 117 175 IPR016177 GO:0003677
Pvu1g2595 295 ProSiteProfiles AP2/ERF domain profile. 117 174 IPR001471 GO:0003700|GO:0006355
Pvu1g2595 295 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 1 291 - -
Pvu1g2595 295 MobiDBLite consensus disorder prediction 224 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2595 Pvu-Chr1 50886895 50888163 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2595 14 294 AP2-EREBP Transcription Factor Family AT4G39780 51.049 5.23e-79 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Pvu1g2595 AP2 1.3e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2595 K09286 - gmx:106796800 387.882
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2595 1 50886895 50888163 Pvu1g2595 1 50886895 50888163 ECH