LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pvu1g2591	ATGTGCAGGAACTCTAGTAACTCAGAGATGGTAGCTTCAAAGAAAAGCACGTTAGAGAAAAGCACGTTAGAGAAAATCACGTTAGAAGAGGTTTTGGACATTGAGAAGAACATGAGTCAGTGGGTGGTGAATCCTCCAGATCCACCCTCCATGTTGCGTCAGGTCGTGGACAACATCAAGGACATCCTCGTACCGCATCCACATCCAAACACATTCTCTTCTCTCAGGAACCAACCCTTTTCCAAACGCGCTTTTGCCTTCTTCAAGAACTTGTTTCCCATTCTTGCTTCATTCCAAAACTACAATGCCCAAAAGTTCAAGTGCGATTTCATGGCTGGCCTAATCCTCGCAATCTTCGCCATTCCTCAGTGCATGGGAAATGCAACATTGGCGCAGCTAAGTCCAGAATATGGCCTCTACACAGGAATTGTGCCACCTCTTATTTATGCTCTGCTAGCGAGTTCAAGGGAAATGGTGATTGGACCTGGATCTGTAGATTCACTGCTACTTTCCTCAATGATTCAGACATTGAAACTTCCAATTCATGATTCTATTGGATACACTCATCTTGTTTTCACTGTAACTTTTTTTGCGGGCATCTTTCAACTTGCTTTCGGCCTCTTTAGGTTTGGTTTTCTGGTGGAATATATTTCCCAATCCACGATCGTAGGGTTCTTGGCAGCAGCTGCTGTGGGCATTGGACTACAACAATTGAAAGGATTATTTGGGATCGATACCAACAAAACTGCTTTATTTTCTGTGCTCAAATCTCTTTGGACATCCTTCAAAAACCAATCATTGTGGCATCCCTACAACTTCGTTATTGGATTCTCATTTCTATGCTTCATCCTATTTACGAGATTCCTGGGTAAAAGGAACAAGAAACTTCTCTGGTTGTCACACGTTGCTCCTCTCTTATCTATTATTGCATCCTCTATTATTGCCTACAAAATAAATGTTCATGAGCACCAAGTGAAGGACTACAGAGTTGAAGTGTTGGGACCAATTAAAGGAGGAGGTAGCTTGAATCCAAGCTCTTTCAATCAGTTAATATTTGACAGCAAAGTTGTGGTTCATTTGATGAGAATAGGCTTGAACATTGCTATTATTTCATTCACGGGATCTATTGCTGTTGGACGATCATTTGCATCTCTAAAAGGACACAGTATTTATCCGAACAGAGAAGTGGTATCCTTGGGCATAATGAACATTGTTGGATCCTTAACTTCTTGCTACATTGCATCAGGGTCTTTGTCACGTAGTGCCGTAAACTACGATGCTGGGTCAGAAACAGTGGTGTCGAACATAGTGATGGCACTCACGGTGCTCTTGTCACTTAAATTTTTGACAGGGCTTTTGTATTTCACTCCCAAAGCAATGTTAGCAGCGATAATTCTTTCGGCTGTACCAGGACTCATTGACCTAAAGAAAGCACGTGAAATTTGGAAGGTCGATAAAATGGATTTCCTTGCTTGTGCTGGAGCCTTCTTCGGAGTCTTGTTTGCATCTCCGGAAATAGGCCTTGCAGTTGGGATCACGATATCATTCGCGAAGATAATTCTAACCTCAGTTCAACCAGCTATAGCGGTTATTGGAAGACTTCCAGGAACGGATTCATTCGGCGATGTTCAACAGTATCCAATGGCACTCAACATTCCTGGAGTTTTCATCGTCTCTTTAAAATCTGCATGGCTTTGTTTTGCAAATGCAAATCTTGTGGAAGAAATGATTGAGAGATGGGTGAACAATGAAAAAGGAGGAGAAAGCACCTTCCATCACGTCATCATAGATGCCTCAAGTCTTACGAACATTGACACCACGGGAATTGCTTCTCTGGTGGAGCTCAATAAAAATATGACTTCACGTGGAGTAAAGTTAGCTATCGCTAACCCTAGGTGGCATGTAATTCACAAGCTAAGATTAGCTAACTTCGTCAGCAAAATTGGAGGAAGGGTTTTCCTTTCTGTGGGAGAAGCAGTTGATGCTTGTGTTACTACTAAAATGGTTGCTGTATAA	2016	0.4211	MCRNSSNSEMVASKKSTLEKSTLEKITLEEVLDIEKNMSQWVVNPPDPPSMLRQVVDNIKDILVPHPHPNTFSSLRNQPFSKRAFAFFKNLFPILASFQNYNAQKFKCDFMAGLILAIFAIPQCMGNATLAQLSPEYGLYTGIVPPLIYALLASSREMVIGPGSVDSLLLSSMIQTLKLPIHDSIGYTHLVFTVTFFAGIFQLAFGLFRFGFLVEYISQSTIVGFLAAAAVGIGLQQLKGLFGIDTNKTALFSVLKSLWTSFKNQSLWHPYNFVIGFSFLCFILFTRFLGKRNKKLLWLSHVAPLLSIIASSIIAYKINVHEHQVKDYRVEVLGPIKGGGSLNPSSFNQLIFDSKVVVHLMRIGLNIAIISFTGSIAVGRSFASLKGHSIYPNREVVSLGIMNIVGSLTSCYIASGSLSRSAVNYDAGSETVVSNIVMALTVLLSLKFLTGLLYFTPKAMLAAIILSAVPGLIDLKKAREIWKVDKMDFLACAGAFFGVLFASPEIGLAVGITISFAKIILTSVQPAIAVIGRLPGTDSFGDVQQYPMALNIPGVFIVSLKSAWLCFANANLVEEMIERWVNNEKGGESTFHHVIIDASSLTNIDTTGIASLVELNKNMTSRGVKLAIANPRWHVIHKLRLANFVSKIGGRVFLSVGEAVDACVTTKMVAV*	672

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Pvu1g2591	671	ProSiteProfiles	STAS domain profile.	565	663	IPR002645	-
Pvu1g2591	671	SUPERFAMILY	SpoIIaa-like	552	663	IPR036513	-
Pvu1g2591	671	Pfam	STAS domain	546	659	IPR002645	-
Pvu1g2591	671	Pfam	Sulfate permease family	106	493	IPR011547	GO:0016021
Pvu1g2591	671	Gene3D	STAS domain	525	667	IPR036513	-
Pvu1g2591	671	CDD	STAS_SulP_like_sulfate_transporter	546	654	-	-
Pvu1g2591	671	PANTHER	SULFATE TRANSPORTER	26	670	IPR001902	GO:0015301\|GO:0016020\|GO:0055085
Pvu1g2591	671	ProSitePatterns	SLC26A transporters signature.	135	156	IPR018045	GO:0008271\|GO:0008272
Pvu1g2591	671	TIGRFAM	sulP: sulfate permease	93	656	IPR001902	GO:0015301\|GO:0016020\|GO:0055085
Pvu1g2591	671	PANTHER	EARLY NODULIN-70	26	670	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Pvu1g2591	Pvu-Chr1	50847592	50853257	Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pvu1g2591	35	668	Inorganic Solute Cotransporters	AT5G10180	51.633	0.0	655

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pvu1g2591	K17469		-	gmx:100817841	1086.25

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pvu1g2591	1	50847592	50853257	Pvu1g2591	1	50847592	50853257	ECH
	Pvu1g2591	1	50847592	50853257	Pvu9g1454	9	20639950	20641396	ECH

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