Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2584 ATGGAAAGAAATGGTGATGGGAGGGCTCAAGATTCAGAGACTCTACCTCCCCATTCTGTTTTAAAGATGGGATTGAGAGAACGTAGCAACAGCAGCAGCATGGAGGATCCTGATGGGACATTAGCAAGTGTTGCCCAATGCATTGAGCAGCTGCGTCAGAGCTCATCTTCTATGCAGGAGAAAGAGTATTCTTTGAAGCAGTTATTGGAGCTTATTGATATTAGAGAAAACGCTTTCAGTGCTGTTGGATCTCATTCTCAGGCAGTTCCAGTACTTGTTTCCCTTCTCCGGTCAGGGTCTTCGAATGTGAAGATACAGGCAGCAACTGTATTGGGTTCACTTTGTAAAGAAAATGAGTTGAGGGTGAAAGTCTTGCTTGGAGGATGCATTCCACCTTTGCTTGGTCTACTCAAGTCCAGTTCTGCTGAAGGTCAAGTGGCTGCTGCAAAGACAATTTTTGCTGTTTCTCAAGGTGGTGCCAAAGATCATGTTGGATCAAAAATTTTTTCAACTGAAGGAGTGGTTCCAGTTCTATGGGAGCAGTTGCAGAAAGGCCTGAAGACAAATGTAGTTGATAATTTATTAACTGGGGCATTGAAAAATCTCTCCAGCAGCACTGATAGATTCTGGAATGCCACAATACAAGCTGGAGGGGTGGACATATTAATTAAGTTACTGAAAACAGGGCAGTCTAACACTTTAGCAAATGTGTGTTTTTTACTTGGCTGTATGATGATGGAGGATGCATCTGTTTGTTCAAAATTGTTGACTTCTGAGGAAACTAAACAACTCCTCAAACTTTTAAGCCCTGGTAATGATGCCCCTGTCAGGGCTGAAGCAGCCGGTGCTCTTAAATCTCTTTCTGCTCAGTGCAAAGATGCAAGAAAAGAGATAGCCAATTCCAATGGCATTCCTGCTTTGATTAATGCTACCATAGCTCCTTCCAAAGAGTTCATGCAGGGTGAGTATGCTCAAGCATTACAGGAGAATGCAATGTGTGCTTTAGCAAACATCTCTGGTGGTTTGTCATATGTCATCTCCAGTCTTGGTCAAAGCCTTGAATCATGCTCCTCGCCTGCCCAAGCTGCTGACACGTTGGGGGCTTTAGCTTCAGCTCTTATGATTTATGATGACAATGCAGAATCTACCAGGGCCACAGATCCTTTGGTAGTTGAGCAGACATTACTTGAACAATTTAAACCTGGCTTGTCATTCCTTGTACAGGAACGGACCATTGAAGCCCTAGCTAGTTTGTATAGCAATCCTATACTGTCAATCAAACTTGCAAATTCTGATCCAAAGCGTTTGCTTGTTGGTTTAATAACAATGGCTGCCAATGAAGTGCAAGATGAACTTCTAAAATCTCTCTTGACATTGTGCAATACTGAATGCAGTCTGTGGCGTGCACTTCAAGGCCGTGAAGGAGTTCAGCTGTTAATATCTCTTCTGGGGCTTTCATCGGAACAGCAGCAAGAATGTGCTGTTGCCCTCCTTTGCCTTTTATCTAATGAAAATGATGAAAGTAAATGGGCTATTACTGCTGCTGGTGGTATACCTCCTCTTGTTCAAATTTTGGAGTCAGGATCTGCAAAAGCAAAGGAAGACTCAGCGTCAATCCTTAGGAACCTATGTGATCACAGTGAGGATATACGTGCTTGTGTTGAAAGTGCTGATGCTGTTCCTGCATTGCTTTGGCTGTTGAAGAATGGAAGCTCAAATGGGAAGGAGATTGCAGCAAAGACTTTGAATCACTTAATTCATAAGTCTGATACAGCAACTATCAGTCAGCTTACAGCATTATTGACCAGTGATTTACCTGAATCTAAGGCTTATGTTTTAGATGCTTTGAAAAGTATGCTTTCAGTTGTTTCTCTTACTGATCTTCTACGTGAAGGTAGTGCTGCCAGTGATGCAGTTGATACAATGATAAAATTACTGAGCTCAACCGAGGAAGAAACTCAGGCAAAGTCTGTGTCTGCTCTGGCGGGAATTTTTGAAATGAGGAAAGATGTGCGTGAAAGCAGCATTGCTGTTAAAACTCTTTGGTCGGCAATGAAGTTGCTTAATGTTGAATCAGAAAGTATCTTAATGGAGTCCTCACGCTGCTTGGCTGCAATATTTCTTTCCATCAAAGAGAACAGGGATGTGGTTGCTATTGCTAGAGATGCTTTACCCTCCCTAGTTTCACTAGCTAACTCTTCAGTTTTGGAAGTGGCGGAGCTGGCAACATGTGCTGTGGCAAATCTTATTTTGGACAGTGAAATTGCTGAGAAAGCTGTTGCAGAAGAAGTCATATTGGCTGCTACCAGAGTATTACGTGAAGGCACAATTTCTGGAAAATCACATGCTGCTGCAGCAATTGCTCGCCTTTTACATTCTAAGAGGCAAGTTGATTATGCTGTAACTGATTGTGTGAATCGAGCTGGCACTGTTCTTGCATTAGTTTCTTTCTTAGACTTTGCTATCAGTGGACTTAGTTCCACATCAGAAGCTCTAGAAGCACTTGCCATGCTGTCCAGGTTAGAAGTGAATGGTGCACACAGTAAGCCTGCTTGGGCAGTTTTGGCTGAATTTCCTAAAAGCATCAGCCCAATAGTTCTGTCCATTACCGATTCAACGCCAGTGTTGCAGGATAAAGCTATTGAAATTTTATCTCGATTATGTATGGATCAACCTTTTGTTCTGGGAGACATTGTTGTTTCTGCCTCTGGATGTATATCTTCTATAGCTAAGAGGATAATCAATTCCACTTCTCAAAATATACAGGTCAAAATTGGAGGAGTTGCTGTTCTTATTTGTGCTGCTAAAGTAAATCACCAGAGGCTGGTGGAGGATCTCAATCTATCAAACTTGTGTGGTAATCTAGTTCAGTCTCTTGTCGACATACTTATTTCTTCACAGGCTACTTTGGGTCAGCGTGACGACAGCAGGGACGTTATCAGAATTTGCAGGCATACAAAAGAAGCCAATGAGGGTAAATCAAGCACTGGCACCACTATTATTTCCGGTGCCAACTTAGCTATATGGTTACTAACTGTTCTTGCTTGCCATGATGAAAAATGTAAAACTGCAATAATGGAGACGGGTGCAATTGAGTTTCTGAGTGACAGGATTGCAAATTGTTTCTCATTGTACAGTCAGATTGACTACAAAGAAGATAGCAGCATGTGGATTTGTGCTTTGTTGTTGGCAATATTATTTCAGGACAGGGATATTATACGAGCACATGCAACCATGAAATCTATACCAGCACTTGCCAATTTATTGAAGTCAGAGGAATCAGCAAACAGATATTTTGCTGCACAATCAATAGCTAGCTTAGTCTGTAATGGTAGCAGGGGAACACTCCTGTCTGTGGCAAATTCTGGGGCAGCAGGTGGACTTATCTCCTTGCTTGGCTGTGCTGATACTGACATACAGGATCTTCTAGAATTGTCAGATGAATTTTCTTTGGTGCATTATCCTGATCAAGTTGCTCTTGAGAGGTTGTTTAGAGTTGATGACATAAGAGTTGGTGCCACTTCTCGGAAGGCAATACCTGCTCTAGTTGATCTGCTCAAACCAATTCCAGAACGTCCTGGTGCACCATTTTTAGCACTTGGGCTTTTGACTCAGCTTGCTATAGATTGTCCATCAAATAAGATTGTAATGGTTGAGGCAGGTGCCCTAGAGGCACTTTCTAAGTATCTTTCACTAGGTCCACAAGATGCAACGGAAGAAGCTGCTACGGATCTGTTAGGGATTCTGTTTAGCAGTGCAGAAATACGGAGACATGAATCAGCATTTGGAGCTGTTACTCAACTTGTAGCTGTACTGCGTTTAGGAGGAAGAGCTGCAAGGTATAGGGCTGCAAAAGCTTTGGAAAGTTTATTCTCCTCTGACCACATTAGAAATGCAGAGACTGCTCGACAAGCTGTCCAACCCTTGGTGGAGATTCTTAATACTGGTTTAGAGAGAGAGCAGCATGCTGCAATTGCTGCATTAGTTAGGTTATTGAGTGAAAACCCTTCAAAAGCACTCGCTGTTGCAGATGTAGAGATGAATGCAGTGGATGTTCTTTGTAGGATTCTTTCATCAGATTGTTCAATGGATCTCAAAAGGGATGCTGCTGAATTATGTTCTGTTCTTTTTGGAAATACAAGGATTCGGTCCACAATGGCTGCTGCACGTTGTGTTGAACCCCTTGTCTCTCTCCTTGTAAGTGAGTTTGGTCCTTCTCACCATTCAGTTGTGCGGGCATTGGATAGACTTGTTGATGATGAGCAACTAGCTGAATTAGTTGCTGCACATGGTGCAGTTATTCCTCTTGTTGGGCTACTTTACGGAAGGAATTATGTACTTCATGAGGCCATTTCCAGAGCTCTGGTCAAGTTGGGAAAAGACAGGCCAGCTTGCAAAATAGAAATGGTGAAAGCTGGAATTATTGAAAGCATACTTGACATCCTTCATGAAGCACCTGATTATCTATGTGCAGCTTTTGCTGAATTGTTGCGTATATTGACCAATAATGCTAGCATAGCTAAAGGACCACCGGCTGCTAAAGTCGTTGAACCGCTGTTTATGTTGCTAATAAGACAAGACTTTGGACCAGATGGACAACACAGTGCATTGCAGGTTTTGGTTAATATCTTAGAACACCCACAGTGTCGTGCTGATTACACACTGTCTTCTCACCAAGCTATTGAACCTCTTATCCCTTTGCTTGATTCTCCAATATCAGCAGTGCAACAGTTGGCAGCTGAGCTTCTCTCACATCTTCTTTTAGAAGAACACCTTCAGAAAGATCCAGTAACACAGCATGTAATTGGCCCTCTTATACGAGTTCTTGGTTCTGGTATACATATATTGCAACAGAGAGCTGTGAAGGCCCTGGTCAGTATTGCACTGCTATGGCCAAATGAAATTGCAAAAGAGGGTGGTGTTATTGAAATTTCAAAAGTTATATTGCAAGCAGATCCTTCCATTCCTCATGCTTTATGGGAATCAGCGGCATCTGTTTTGGCTAGTATTCTGCAATTTAGTTCTGAATACTACCTGGAAGTTCCAGTTGCTGTTTTGGTTAGGCTGCTTAGATCTGGCTTAGAAAGCACAGTTGTTGGTGCATTAAATGCTCTCCTTGTGTTGGAAAGTGACGATGGAACTAGTGCCGAAGCAATGGCTGAAAGTGGTGCCATAGAGGCTCTCTTAGAGCTCCTAAGATCTCATCAGTGCGAGGAAACTGCTGCAAGACTCTTAGAAGCATTGCTGAACAATGTAAAGATCAGAGAAACAAAAGTTACTAAATCAGCCATCTTACCATTATCCCATTATCTATTGGACCCACAAACCCAAGCACAACAAGCAAGGTTATTAGCAACATTGGCTCTTGGCGATCTATTTCAGAACGAGGGTCTTGCCCGGTCAAGTGATGCAGTTTCAGCTTGTCGTGCTTTAGTGAATGTGCTTGAAGACCAACCAACTGAAGAAATGAAAGTTGTAGCCATATGTGCTCTACAAAACCTTGTGATGAACAGTCGATCAAATAAAAGAGCAGTTGCAGAGGCTGGTGGGGTTCAGGTTATTCTGGATCTGATAGGTTCAAGTGATCCTGAAACATCTGTTCAGGCTGCAATGTTTATTAAACTTCTATTTTCAAATCATACCATTCAAGAGTATGCTTCTAGTGAAACAGTCAGAGCAATAACTGCTGCTATTGAAAAGGACTTATGGGCTACTGGAACTGTGAACGAAGAGTATCTTAAAGCCTTAAATTCTCTTTTTAGCAACTTCCCTAGACTGAGAGCAACTGAGCCAGCAACACTTAGCATTCCCCATCTGGTTACATCCTTAAAGACAGGCTCTGAGGCTACTCAGGAAGCTGCCTTGGATGCACTTTTCCTGCTTAGGCAAGCTTGGTCAGCATGTTCAGCAGAAGTTTCAAGAGCTCAATCAATAGCAGCTGCAGATGCTATTCCTTTGCTGCAGTACTTAATCCAGTCTGCCCCTCCTCGCTTTCAGGAGAAGGCAGAGTTTTTATTGCAGTGTTTGCCTGGAACCTTGGTGGTGATCATCAAGCGTGGTAACAATATGAAGCAATCTGTTGGAAACCCAAGTGTTTTTTGCAAGCTTACGCTTGGAAACACTCCTCCAAGGCAAACCAAGGTGGTCTCAACTGGCCCTAATCCGGAGTGGGAAGAGAGCTTTTCATGGTCCTTTGAGAGTCCTCCAAAAGGCCAGAAGCTTCACATATCTTGCAAAAACAAGAGCAAAATGGGAAAGAGTTCATTTGGGAAAGTGACAATCCAGATCGATCGGGTAGTAATGCTAGGAGCAGTATCTGGAGAGTACACTTTGTTGCCAGAAAGTAAGAGTGGCCCCTCGAGGAATTTAGAAATAGAATTCCAGTGGTCTAACAAGTGA 6399 0.4268 MERNGDGRAQDSETLPPHSVLKMGLRERSNSSSMEDPDGTLASVAQCIEQLRQSSSSMQEKEYSLKQLLELIDIRENAFSAVGSHSQAVPVLVSLLRSGSSNVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLKSSSAEGQVAAAKTIFAVSQGGAKDHVGSKIFSTEGVVPVLWEQLQKGLKTNVVDNLLTGALKNLSSSTDRFWNATIQAGGVDILIKLLKTGQSNTLANVCFLLGCMMMEDASVCSKLLTSEETKQLLKLLSPGNDAPVRAEAAGALKSLSAQCKDARKEIANSNGIPALINATIAPSKEFMQGEYAQALQENAMCALANISGGLSYVISSLGQSLESCSSPAQAADTLGALASALMIYDDNAESTRATDPLVVEQTLLEQFKPGLSFLVQERTIEALASLYSNPILSIKLANSDPKRLLVGLITMAANEVQDELLKSLLTLCNTECSLWRALQGREGVQLLISLLGLSSEQQQECAVALLCLLSNENDESKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCDHSEDIRACVESADAVPALLWLLKNGSSNGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKAYVLDALKSMLSVVSLTDLLREGSAASDAVDTMIKLLSSTEEETQAKSVSALAGIFEMRKDVRESSIAVKTLWSAMKLLNVESESILMESSRCLAAIFLSIKENRDVVAIARDALPSLVSLANSSVLEVAELATCAVANLILDSEIAEKAVAEEVILAATRVLREGTISGKSHAAAAIARLLHSKRQVDYAVTDCVNRAGTVLALVSFLDFAISGLSSTSEALEALAMLSRLEVNGAHSKPAWAVLAEFPKSISPIVLSITDSTPVLQDKAIEILSRLCMDQPFVLGDIVVSASGCISSIAKRIINSTSQNIQVKIGGVAVLICAAKVNHQRLVEDLNLSNLCGNLVQSLVDILISSQATLGQRDDSRDVIRICRHTKEANEGKSSTGTTIISGANLAIWLLTVLACHDEKCKTAIMETGAIEFLSDRIANCFSLYSQIDYKEDSSMWICALLLAILFQDRDIIRAHATMKSIPALANLLKSEESANRYFAAQSIASLVCNGSRGTLLSVANSGAAGGLISLLGCADTDIQDLLELSDEFSLVHYPDQVALERLFRVDDIRVGATSRKAIPALVDLLKPIPERPGAPFLALGLLTQLAIDCPSNKIVMVEAGALEALSKYLSLGPQDATEEAATDLLGILFSSAEIRRHESAFGAVTQLVAVLRLGGRAARYRAAKALESLFSSDHIRNAETARQAVQPLVEILNTGLEREQHAAIAALVRLLSENPSKALAVADVEMNAVDVLCRILSSDCSMDLKRDAAELCSVLFGNTRIRSTMAAARCVEPLVSLLVSEFGPSHHSVVRALDRLVDDEQLAELVAAHGAVIPLVGLLYGRNYVLHEAISRALVKLGKDRPACKIEMVKAGIIESILDILHEAPDYLCAAFAELLRILTNNASIAKGPPAAKVVEPLFMLLIRQDFGPDGQHSALQVLVNILEHPQCRADYTLSSHQAIEPLIPLLDSPISAVQQLAAELLSHLLLEEHLQKDPVTQHVIGPLIRVLGSGIHILQQRAVKALVSIALLWPNEIAKEGGVIEISKVILQADPSIPHALWESAASVLASILQFSSEYYLEVPVAVLVRLLRSGLESTVVGALNALLVLESDDGTSAEAMAESGAIEALLELLRSHQCEETAARLLEALLNNVKIRETKVTKSAILPLSHYLLDPQTQAQQARLLATLALGDLFQNEGLARSSDAVSACRALVNVLEDQPTEEMKVVAICALQNLVMNSRSNKRAVAEAGGVQVILDLIGSSDPETSVQAAMFIKLLFSNHTIQEYASSETVRAITAAIEKDLWATGTVNEEYLKALNSLFSNFPRLRATEPATLSIPHLVTSLKTGSEATQEAALDALFLLRQAWSACSAEVSRAQSIAAADAIPLLQYLIQSAPPRFQEKAEFLLQCLPGTLVVIIKRGNNMKQSVGNPSVFCKLTLGNTPPRQTKVVSTGPNPEWEESFSWSFESPPKGQKLHISCKNKSKMGKSSFGKVTIQIDRVVMLGAVSGEYTLLPESKSGPSRNLEIEFQWSNK* 2133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2584 2132 Gene3D - 854 1144 IPR011989 -
Pvu1g2584 2132 Gene3D - 29 390 IPR011989 -
Pvu1g2584 2132 Gene3D - 435 631 IPR011989 -
Pvu1g2584 2132 SUPERFAMILY ARM repeat 859 1140 IPR016024 -
Pvu1g2584 2132 Gene3D - 1798 2009 IPR011989 -
Pvu1g2584 2132 SUPERFAMILY ARM repeat 1561 2006 IPR016024 -
Pvu1g2584 2132 SMART arm_5 547 587 IPR000225 GO:0005515
Pvu1g2584 2132 SMART arm_5 75 116 IPR000225 GO:0005515
Pvu1g2584 2132 SMART arm_5 1546 1588 IPR000225 GO:0005515
Pvu1g2584 2132 SMART arm_5 710 751 IPR000225 GO:0005515
Pvu1g2584 2132 SMART arm_5 1420 1460 IPR000225 GO:0005515
Pvu1g2584 2132 SMART arm_5 798 840 IPR000225 GO:0005515
Pvu1g2584 2132 SMART arm_5 1165 1208 IPR000225 GO:0005515
Pvu1g2584 2132 SMART arm_5 1292 1333 IPR000225 GO:0005515
Pvu1g2584 2132 SMART arm_5 1711 1750 IPR000225 GO:0005515
Pvu1g2584 2132 SMART arm_5 117 157 IPR000225 GO:0005515
Pvu1g2584 2132 SMART arm_5 1838 1878 IPR000225 GO:0005515
Pvu1g2584 2132 SMART arm_5 1379 1419 IPR000225 GO:0005515
Pvu1g2584 2132 SMART arm_5 1210 1251 IPR000225 GO:0005515
Pvu1g2584 2132 SMART arm_5 291 340 IPR000225 GO:0005515
Pvu1g2584 2132 SMART arm_5 248 289 IPR000225 GO:0005515
Pvu1g2584 2132 SMART arm_5 1462 1502 IPR000225 GO:0005515
Pvu1g2584 2132 SMART arm_5 505 545 IPR000225 GO:0005515
Pvu1g2584 2132 Gene3D C2 domain 2010 2132 IPR035892 -
Pvu1g2584 2132 Gene3D - 1682 1784 IPR011989 -
Pvu1g2584 2132 Gene3D - 632 848 IPR011989 -
Pvu1g2584 2132 PANTHER CELLULOSE SYNTHASE-INTERACTIVE PROTEIN 5 2132 - -
Pvu1g2584 2132 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2010 2129 IPR035892 -
Pvu1g2584 2132 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 1806 1849 IPR000225 GO:0005515
Pvu1g2584 2132 Gene3D - 1279 1409 IPR011989 -
Pvu1g2584 2132 Gene3D - 1156 1278 IPR011989 -
Pvu1g2584 2132 Pfam Armadillo/beta-catenin-like repeat 85 115 IPR000225 GO:0005515
Pvu1g2584 2132 Pfam Armadillo/beta-catenin-like repeat 505 545 IPR000225 GO:0005515
Pvu1g2584 2132 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 1177 1221 IPR000225 GO:0005515
Pvu1g2584 2132 MobiDBLite consensus disorder prediction 25 39 - -
Pvu1g2584 2132 SUPERFAMILY ARM repeat 1174 1586 IPR016024 -
Pvu1g2584 2132 ProSiteProfiles C2 domain profile. 1994 2109 IPR000008 -
Pvu1g2584 2132 SMART C2_3c 2012 2108 IPR000008 -
Pvu1g2584 2132 CDD C2 2013 2103 - -
Pvu1g2584 2132 Gene3D - 1410 1681 IPR011989 -
Pvu1g2584 2132 SUPERFAMILY ARM repeat 594 945 IPR016024 -
Pvu1g2584 2132 SUPERFAMILY ARM repeat 46 273 IPR016024 -
Pvu1g2584 2132 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 516 558 IPR000225 GO:0005515
Pvu1g2584 2132 Coils Coil 277 297 - -
Pvu1g2584 2132 PANTHER PROTEIN CELLULOSE SYNTHASE INTERACTIVE 1 5 2132 IPR044297 GO:0008017|GO:0010330|GO:0051211|GO:2001006
Pvu1g2584 2132 SUPERFAMILY ARM repeat 197 589 IPR016024 -
Pvu1g2584 2132 MobiDBLite consensus disorder prediction 1 39 - -
Pvu1g2584 2132 Pfam C2 domain 2011 2107 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2584 Pvu-Chr1 50796359 50806856 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2584 1213 1439 U-box Gene Family AT1G71020 30.769 9.01e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2584 - - gmx:100816765 3767.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g2701 2 42880456 42891708 Pvu1g2584 1 50796359 50806856 PCT